Construct: ORF TRCN0000474925

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003425.1_s317c1
Derived from:
ccsbBroadEn_04393
DNA Barcode:
GCATGGCCAGGCAATCCAATATCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LCOR (84458)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474925
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84458 LCOR ligand dependent nuclear re... NM_001170766.2 100% 100%
2 human 84458 LCOR ligand dependent nuclear re... NM_001170765.2 93.6% 93.3% 1215_1217delGTCinsT;1221_1299del
3 human 84458 LCOR ligand dependent nuclear re... NM_032440.4 93.6% 93.3% 1215_1217delGTCinsT;1221_1299del
4 mouse 212391 Lcor ligand dependent nuclear re... NM_172154.4 90.6% 91.4% (many diffs)
5 mouse 212391 Lcor ligand dependent nuclear re... XM_006526849.3 90.6% 91.4% (many diffs)
6 mouse 212391 Lcor ligand dependent nuclear re... XM_006526850.3 90.6% 91.4% (many diffs)
7 mouse 212391 Lcor ligand dependent nuclear re... XM_006526848.3 66.2% 66.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1284
ORF length:
1218
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca gcgaatgatc caacaatttg ctgctgaata tacctcaaaa aatagctcta
121ctcaggaccc cagccagccc aatagcacaa agaaccaaag cctgccgaaa gcatctccag
181tcaccacctc tcccacggct gcaactactc agaaccctgt gctcagcaaa cttctcatgg
241ctgaccaaga ctcacctctg gaccttactg tcagaaagtc tcagtcagaa cctagcgaac
301aagacggtgt acttgatctg tccactaaga aaagtccatg tgctggcagc acttccctga
361gccactctcc aggctgctcc agtactcaag ggaacgggcg acctgggaga cccagccagt
421accgcccaga cggacttcgg agtggtgatg gggtacctcc aagaagctta caggatggaa
481ccagggaagg ttttggacac tccacatcac tcaaagttcc actggctcga tccctgcaga
541ttagtgaaga actactgagc agaaaccaat tgtccacagc tgccagcctt gggccatctg
601gattacagaa tcatggacaa cacttaatat tatccaggga agcctcttgg gcaaaaccac
661attacgagtt caacctcagc cgtatgaagt tcaggggaaa tggtgcactc agcaacatca
721gtgaccttcc ttttcttgca gaaaactctg cctttccaaa aatggcactt caagcaaaac
781aagatggaaa aaaggatgtg agCCATTCAT CTCCTGTAGA TTTAAAGATA CCACAAGTTC
841GAGGAATGGA TCTTTCTTGG GAGTCTCGCA CTGGTGATCA GTACAGCTAT AGCTCTTTGG
901TAATGGGTTC ACAAACGGAG AGCGCGCTTA GTAAAAAATT AAGGGCTATT CTTCCAAAAC
961AAAGTAGAAA AAGCATGTTA GATGCTGGAC CCGATTCTTG GGGCTCAGAT GCTGAGCAGT
1021CTACCTCTGG ACAGCCATAT CCCACATCGG ATCAAGAAGG AGACCCTGGC TCCAAGCAGC
1081CTCGGAAGAA AAGAGGGCGT TACAGACAGT ACAACAGTGA GATACTGGAG GAAGCAATCT
1141CAGTGGTTAT GAGTGGAAAA ATGAGTGTTT CCAAAGCTCA GAGTATTTAT GGGATTCCCC
1201ACAGTACACT GGAGTACAAA GTAAAGGAGA GGCTGGGCAC TTTGAAAAAC CCTCCAAAGA
1261AAAAGATGAA ATTAATGAGT GGATGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1321AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1381TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG CATGGCCAGG
1441CAATCCAATA TCGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1501att

Download FASTA (ORF) (Full)