Construct: ORF TRCN0000474928
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005307.1_s317c1
- Derived from:
- ccsbBroadEn_12903
- DNA Barcode:
- AGCTCAATAAAATGACATAATCCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM241 (85019)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474928
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148382.1 | 7.6% | 1_819del;1042_2899del | |
| 2 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134876.1 | 7.6% | 1_815del;1038_2900del | |
| 3 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148384.1 | 7.5% | 1_848del;1071_2928del | |
| 4 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148385.1 | 7.5% | 1_862del;1085_2942del | |
| 5 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148383.1 | 7.4% | 1_897del;1120_2977del | |
| 6 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134875.1 | 7.4% | 1_895del;1118_2989del | |
| 7 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134877.1 | 7.4% | 1_898del;1121_2992del | |
| 8 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753289.1 | 5.5% | 1_934del;1157_3972del | |
| 9 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753290.2 | 4% | 1_801del;1024_5419del | |
| 10 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753291.1 | 4% | 1_768del;991_5467del | |
| 11 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753288.1 | 3.9% | 1_934del;1157_5552del | |
| 12 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753293.1 | 3.9% | 1_998del;1221_5616del | |
| 13 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753292.2 | 3.9% | 1_1042del;1265_5660del | |
| 14 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753287.1 | 3.8% | 1_1074del;1297_5773del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 312
- ORF length:
- 222
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGCCTCCTGC TCGGTGCGCT TGGAGAGGCC 121 TTGCTGGTTT TCTCAGAGCG GAAGAGCTCC TGAACAAGAC GGTCAAGAGA AAGACTCACA 181 GGCTGCTGCG GGAGAACAGC TTGTACACCT GTGTACGAGC CCCTGGTCTC ATAGCTCCCT 241 GTTGGATGTG TCAGAAAGAG GAATGCAAGG ACAGTGAGGC CAGGTGGGCA GTGCCATCAC 301 CCTCACCCAA GTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 361 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 421 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAAGC TCAATAAAAT GACATAATCC 481 AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t