Construct: ORF TRCN0000475017

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002188.1_s317c1
Derived from:
ccsbBroadEn_07801
DNA Barcode:
CGCCGCCCCTCCTTCCGCCCGTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF13 (11342)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475017
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11342 RNF13 ring finger protein 13 NM_007282.4 99.9% 100% 789C>T
2 human 11342 RNF13 ring finger protein 13 NM_183381.2 99.9% 100% 789C>T
3 human 11342 RNF13 ring finger protein 13 XM_011512373.2 99.9% 100% 789C>T
4 human 11342 RNF13 ring finger protein 13 XM_011512374.2 99.9% 100% 789C>T
5 human 11342 RNF13 ring finger protein 13 XM_017005654.1 99.9% 100% 789C>T
6 human 11342 RNF13 ring finger protein 13 XM_017005655.1 99.9% 100% 789C>T
7 human 11342 RNF13 ring finger protein 13 XM_024453332.1 99.9% 100% 789C>T
8 human 11342 RNF13 ring finger protein 13 NM_183383.2 67.2% 63.7% 0_1ins367;43_52delGTAAGTACAG;432C>T
9 human 11342 RNF13 ring finger protein 13 XM_005247092.4 67.2% 63.7% 0_1ins367;43_52delGTAAGTACAG;432C>T
10 human 11342 RNF13 ring finger protein 13 XM_011512376.2 67.2% 63.7% 0_1ins367;43_52delGTAAGTACAG;432C>T
11 human 11342 RNF13 ring finger protein 13 XM_017005656.1 67.2% 63.7% 0_1ins367;43_52delGTAAGTACAG;432C>T
12 human 11342 RNF13 ring finger protein 13 XM_017005657.1 67.2% 63.7% 0_1ins367;43_52delGTAAGTACAG;432C>T
13 human 11342 RNF13 ring finger protein 13 XM_017005658.1 67.2% 63.7% 0_1ins367;43_52delGTAAGTACAG;432C>T
14 human 11342 RNF13 ring finger protein 13 XM_017005660.1 65.5% 65.6% 0_1ins393;396C>T
15 human 11342 RNF13 ring finger protein 13 XM_017005661.2 48.4% 47.5% (many diffs)
16 human 11342 RNF13 ring finger protein 13 XR_002959487.1 46.4% (many diffs)
17 human 11342 RNF13 ring finger protein 13 XR_001739990.2 39.8% (many diffs)
18 mouse 24017 Rnf13 ring finger protein 13 NM_001113413.2 89.6% 93.4% (many diffs)
19 mouse 24017 Rnf13 ring finger protein 13 XM_006501457.3 89.6% 93.4% (many diffs)
20 mouse 24017 Rnf13 ring finger protein 13 XM_006501458.3 83.1% 86.6% (many diffs)
21 mouse 24017 Rnf13 ring finger protein 13 NM_001304454.1 82.6% 85.8% (many diffs)
22 mouse 24017 Rnf13 ring finger protein 13 NM_011883.4 63.5% 66.4% (many diffs)
23 mouse 24017 Rnf13 ring finger protein 13 NM_001304456.1 59% 59.5% (many diffs)
24 mouse 24017 Rnf13 ring finger protein 13 NR_130743.1 28.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1209
ORF length:
1143
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct gctctccata gggatgctca tgctgtcagc cacacaagtc tacaccatct
121tgactgtcca gctctttgca ttcttaaacc tactgcctgt agaagcagac attttagcat
181ataactttga aaatgcatct cagacatttg atgacctccc tgcaagattt ggttatagac
241ttccagctga aggtttaaag ggttttttga ttaactcaaa accagagaat gcctgtgaac
301ccatagtgcc tccaccagta aaagacaatt catctggcac tttcatcgtg ttaattagaa
361gacttgattg taattttgat ataaaggttt taaatgcaca gagagcagga tacaaggcag
421ccatagttca caatgttgat tctgatgacc tcattagcat gggatccaac gacattgagg
481tactaaagaa aattgacatt ccatctgtct ttattggtga atcatcagct aattctctga
541aagatgaatt cacatatgaa aaagggggcc accttatctt agttccagaa tttagtcttc
601ctttggaata ctacctaatt cccttcctta tcatagtggg catctgtctc atcttgatag
661tcattttcat gatcacaaaa tttgtccagg atagacatag agctagaaga aacagacttc
721gtaaagatca acttaagaaa cttcctgtac ataaattcaa gaaaggagat gagtatgatg
781tatgtgccat ttgtttggat gagtatgaag atggagacaa actcagaatc cttccctgtt
841cccatgctta tcattgcaag tgtgtagacc cttggctaac taaaaccaaa aaaacctgtc
901cagtgtgcaa gcaaaaagtt gttccttctc aaggcgattc agactctgac acagacagta
961gtcaagaaga aaatgaagtg acagaacata cccctttact gagaccttta gcttctgtca
1021gtgcccagtc atttggggct ttatcggaat cccgctcaca tcagaacatg acagaatctt
1081cagactatga ggaagacgac aatgaagata ctgacagtag tgatgcagaa aatgaaatta
1141atgaacatga tgtcgtggtC CAGTTGCAGC CTAATGGTGA ACGGGATTAC AACATAGCAA
1201ATACTGTTTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1261CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1321TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACGCCGC CCCTCCTTCC GCCCGTTTAC
1381GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)