Construct: ORF TRCN0000475020

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018268.1_s317c1
Derived from:
ccsbBroadEn_13447
DNA Barcode:
GGAGTATTTGACGGATTCCCAAGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STXBP4 (252983)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475020
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 252983 STXBP4 syntaxin binding protein 4 NM_178509.6 95.9% 95.6% 274G>A;946_1011del;1513G>A
2 human 252983 STXBP4 syntaxin binding protein 4 XM_005257187.4 95.5% 95.3% (many diffs)
3 human 252983 STXBP4 syntaxin binding protein 4 XM_017024411.2 93.2% 92.9% (many diffs)
4 human 252983 STXBP4 syntaxin binding protein 4 XM_017024410.1 92.8% 92.6% (many diffs)
5 human 252983 STXBP4 syntaxin binding protein 4 XM_017024412.2 85.6% 85.5% 274G>A;946_1011del;1488_1489ins171
6 human 252983 STXBP4 syntaxin binding protein 4 XM_017024413.1 79.3% 79.1% (many diffs)
7 human 252983 STXBP4 syntaxin binding protein 4 XM_006721798.4 59.9% 59.1% (many diffs)
8 human 252983 STXBP4 syntaxin binding protein 4 XM_006721797.4 59.6% 58.9% (many diffs)
9 human 252983 STXBP4 syntaxin binding protein 4 XM_017024414.2 57.9% 57.1% (many diffs)
10 human 252983 STXBP4 syntaxin binding protein 4 XM_017024415.1 57.9% 57.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1662
ORF length:
1593
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaataaaaat acatctactg tagtatcacc cagtctactt gaaaaggatc
121ctgcctttca gatgattaca attgccaagg aaacaggcct tggcctgaag gtactaggag
181gaattaaccg gaatgaaggc ccattggtat atattcagga aattattcct ggaggagact
241gttataagga tggtcgtttg aagccaggag atcaacttgt ctcagtcaac aaggaatcta
301tgattggtgt atcatttgaa gaagcaaaaa gcataattac cagagccaag ttgaggttag
361aatctgcttg ggagatagca ttcataagac aaaaatccga caacattcag ccagaaaatc
421tgtcatgtac atcacttata gaagcttcag gagaatatgg acctcaagcc tcaacattaa
481gtcttttttc ttctcctcct gaaatactaa tcccaaagac ctcatccact cccaaaacaa
541ataatgacat tttatcttct tgtgagataa aaactggata caacaaaaca gtacagattc
601caattacttc agaaaacagt actgtgggtt tgtctaatac agatgttgct tctgcctgga
661ctgaaaatta tgggctacaa gaaaagatct ccctaaatcc ctctgttcgc tttaaggcag
721agaaactgga aatggctcta aattatcttg gtattcagcc cacaaaggaa caacaccaag
781ccctgagaca gcaagtacaa gcagactcaa aagggacagt gtcttttgga gattttgtcc
841aggttgccag aaacttgttt tgcttgcagt tggatgaagt aaatgttggt gcacatgaaa
901tttccaatat attagattca cagcttcttc cttgtgattc ttcagaagca gatgaaatgg
961aaaggctcaa gtgtgaaaga gatgatgcct tgaaagaagt aaatacactt aaggaagcca
1021aagctgtagt tgaagaaaca agagccctgc gtagtcggat tcatcTTGCT GAAGCTGCTC
1081AGAGACAGGC ACATGGAATG GAAATGGACT ATGAAGAAGT GATCCGTCTG TTAGAGGCCA
1141AGATTACAGA GCTAAAGGCT CAGCTTGCTG ATTATTCTGA CCAAAATAAA GAAAGTGTTC
1201AGGATTTAAA AAAGAGAATC ATGGTACTCG ACTGCCAATT ACGAAAATCA GAAATGGCTC
1261GAAAAACTTT TGAGGCATCC ACTGAAAAGC TTCTTCATTT TGTAGAGGCT ATTCAAGAAG
1321TATTTTCTGA TAATTCTACT CCTTTATCAA ATTTAAGTGA AAGAAGAGCT GTGTTAGCTT
1381CTCAGACTTC CCTCACACCA CTGGGAAGGA ATGGACGTAG CATCCCAGCA ACGCTGGCGC
1441TTGAATCTAA GGAACTTGTT AAATCTGTTC GTGCCTTACT TGATATGGAT TGTTTACCTT
1501ATGGGTGGGA GGAAACTTAC ACAGCAGATG GAATCAAGTA CTTCATCAAT CATGTAACAC
1561AGACTACATC CTGGATCCAT CCCGTGATGA GTGTCCTGAA TCTATCTCGC TCAGAGGAGA
1621ATGAAGAGGA TTGCTCTAGA GAACTCCCCA ACCAGAAAAG TTTGCCAACT TTCTTGTACA
1681AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1741AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
1801AGGACGAGGA GTATTTGACG GATTCCCAAG GACGCGTTAA GTCgacaatc aacctctgga
1861ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)