Construct: ORF TRCN0000475068

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018065.1_s317c1
Derived from:
ccsbBroadEn_06013
DNA Barcode:
CCAGGTAATGCTACACACGGGTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLPTM1 (1209)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475068
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1209 CLPTM1 CLPTM1 regulator of GABA ty... NM_001294.4 96.7% 96% (many diffs)
2 human 1209 CLPTM1 CLPTM1 regulator of GABA ty... NM_001282175.1 93.8% 92.5% (many diffs)
3 human 1209 CLPTM1 CLPTM1 regulator of GABA ty... NM_001282176.1 81.9% 81.1% (many diffs)
4 mouse 56457 Clptm1 cleft lip and palate associ... NM_019649.2 85.9% 91.1% (many diffs)
5 mouse 56457 Clptm1 cleft lip and palate associ... XM_006540227.1 72.2% 76.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2124
ORF length:
2058
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcggcgcag gaggcggacg gggcccgcag cgccgtggtg gcggccgggg
121gaggcagctc cggtcaggtg accagcaatg gcagcatcgg gagggacccg ccagcggaga
181cccagcctca gaacccaccg gcccagccgg cacccaatgc ctggcaggtc atcaaaggtg
241tgctgtttag gatcttcatc atctgggcca tcagcagttg gttccgccga gggccggccc
301ctcaggacca ggcgggcccc ggaggagccc cacgcgtcgc cagccgcaac ctgttcccca
361aagacacttt aatgaacctg catgtgtaca tctcagagca cgagcacttt acagacttca
421acgccacgtc ggcactcttc tgggaacagc acgatcttgt gtatggcgac tggactagcg
481gcgagaactc agacggctgc tacgagcact ttgctgagct cgatatccca cagagcgtcc
541agcagaacgg ctccatctac atccacgttt acttcaccaa gagtggcttc cacccagacc
601cccggcagaa ggccctgtac cgccggcttg ccacagtcca catgtcccgg atgatcaaca
661aatacaagcg cagacgattt cagaaaacca agaacctgct gacaggagag acagaagcgg
721acccagaaat gatcaagagg gctgaggact atgggcctgt ggaggtgatc tcccattggc
781accccaacat caccatcaac atcgtggacg accacacgcc gtgggtgaag ggcagtgtgc
841cccctcccct ggatcaatat gtgaagttcg acgccgtgag cggtgactac tatcccatca
901tctacttcaa tgactactgg aacctgcaga aggactacta ccccatcaac gagagcctgg
961ccagcctgcc gctccgcgtc tccttctgcc cgctctcgct ttggcgctgg cagctctatg
1021ctgcccagag caccaagtcg ccctggaact tcctgggtga tgagttgtac gagcagtcag
1081atgaggagca ggactcggtg aaggtggccc tgctggagac caacccctac ctgctggcgc
1141tcaccatcat cgtgtctatc gttcacagtg tcttcgagtt cctggccttc aagaatgata
1201tccagttctg gaacagccgg cagtccctgg agggcctgtc cgtgcgctcc gtcttcttcg
1261gcgttttcca gtcattcgtg gtcctcctct acatcctgga caacgagacc aacttcgtgg
1321tccaggtcag cgtcttcatt ggggtcctca tcgacctctg gaagatcacc aaggtcatgg
1381acgtccggct ggaccgagag cacagggtgg caggaatctt cccccgccta tccttcaagg
1441acaagtccac gtatatcgag tcctcgacca aagtgtatga tgatatggca ttccggtacc
1501tgtcctggat cctcttcccg ctcctgggct gctatgccgt ctacagtctt ctgtacctgg
1561agcacaaggg ctggtactcc tgggtgctca gcatgctcta cggcttcctg ctgaccttcg
1621gcttcatcac catgacgccc cagctcttca tcaactacaa gctcaagtct gtggcccacc
1681ttccctggcg catgctcacc tacaaggccc tcaacacatt catcgacgac ctgttcgcct
1741ttgtcatcaa gatgcccgtt atgtaccgga tcggctgcct gcgggacgat gtggttttct
1801tcatctacct cTACCAACGG TGGATCTACC GCGTCGACCC CACCCGAGTC AACGAGTTTG
1861GCATGAGTGG AGAAGACCCC ACAGCTGCCG CCCCCGTGGC CGAGGTTCCC ACAGCAGCAG
1921GGGCCCTCAC GCCCACACCT GCACCCACCA CGACCACCGC CACCAGGGAG GAGGCCTCCA
1981CGTCCCTGCC CACCAAGCCC ACCCAGGGGG CCAGCTCTGC CAGCGAGCCC CAGGGTTTGT
2041TTGTGGAGGC GCTGTCTGTC CCTCTGTCCC TCTGTGTTTC CAGCCATCTC GCCCTGCCAG
2101CCCAGCACCA CTGGGAATCA TGGTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
2161AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
2221TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC CAGGTAATGC
2281TACACACGGG TTTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
2341att

Download FASTA (ORF) (Full)