Construct: ORF TRCN0000475125
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010910.1_s317c1
- Derived from:
- ccsbBroadEn_08286
- DNA Barcode:
- TGGCCTCAAACAAGCTGAAAATGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COMMD10 (51397)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475125
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51397 | COMMD10 | COMM domain containing 10 | NM_016144.4 | 99.8% | 100% | 6G>A |
| 2 | human | 51397 | COMMD10 | COMM domain containing 10 | NM_001308080.1 | 93% | 93% | 0_1ins42 |
| 3 | human | 51397 | COMMD10 | COMM domain containing 10 | NR_146218.2 | 10.8% | (many diffs) | |
| 4 | human | 51397 | COMMD10 | COMM domain containing 10 | NR_146220.2 | 10.8% | (many diffs) | |
| 5 | human | 51397 | COMMD10 | COMM domain containing 10 | NR_146219.1 | 10.4% | (many diffs) | |
| 6 | mouse | 69456 | Commd10 | COMM domain containing 10 | NM_178377.4 | 84.8% | 89.1% | (many diffs) |
| 7 | mouse | 69456 | Commd10 | COMM domain containing 10 | XM_006526224.3 | 67.9% | 55.8% | (many diffs) |
| 8 | mouse | 69456 | Commd10 | COMM domain containing 10 | XM_006526228.3 | 63.6% | 67.3% | (many diffs) |
| 9 | mouse | 69456 | Commd10 | COMM domain containing 10 | XM_006526225.3 | 51% | 39.7% | (many diffs) |
| 10 | mouse | 69456 | Commd10 | COMM domain containing 10 | XM_006526229.3 | 47% | 50% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 672
- ORF length:
- 606
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc agtccccgcg gcgctgatcc tacgggagag ccccagcatg aagaaagcag 121 tgtcactgat aaatgcaata gatacaggaa gatttccacg gttgctcact cggattcttc 181 aaaaacttca cctgaaggct gagagcagtt tcagtgaaga agaggaagaa aaacttcaAG 241 CGGCATTTTC TCTAGAGAAA CAAGATCTTC ACCTAGTTCT TGAAACAATA TCATTTATTT 301 TAGAACAGGC AGTGTATCAC AATGTGAAGC CAGCAGCTTT GCAGCAGCAA TTAGAGAACA 361 TTCATCTTAG ACAAGACAAA GCTGAAGCAT TTGTCAATAC GTGGTCTTCT ATGGGTCAAG 421 AAACAGTTGA AAAGTTCCGG CAGAGAATTC TGGCTCCCTG TAAGCTAGAG ACCGTTGGAT 481 GGCAGCTTAA CCTTCAGATG GCTCACTCTG CTCAAGCAAA ACTAAAATCT CCTCAAGCTG 541 TGTTACAACT CGGAGTGAAC AATGAAGATT CAAAGAGCCT GGAGAAAGTT CTTGTGGAAT 601 TCAGTCACAA GGAGTTGTTT GATTTCTATA ACAAGCTAGA GACTATACAA GCACAGCTGG 661 ATTCCCTTAC ATGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 721 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 781 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATGG CCTCAAACAA GCTGAAAATG 841 TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t