Construct: ORF TRCN0000475193

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017965.1_s317c1
Derived from:
ccsbBroadEn_09566
DNA Barcode:
TTACGGATGTACCCATGTAAGGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SVOPL (136306)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475193
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 136306 SVOPL SVOP like NM_174959.3 99.9% 100% 882A>G
2 human 136306 SVOPL SVOP like XM_011515797.2 99.9% 100% 882A>G
3 human 136306 SVOPL SVOP like XM_017011747.1 99.9% 100% 882A>G
4 human 136306 SVOPL SVOP like XM_017011748.1 99.9% 100% 882A>G
5 human 136306 SVOPL SVOP like NM_001331192.1 84.2% 83.5% (many diffs)
6 human 136306 SVOPL SVOP like XM_024446654.1 84.2% 83.5% (many diffs)
7 human 136306 SVOPL SVOP like XM_024446655.1 84.2% 83.5% (many diffs)
8 human 136306 SVOPL SVOP like NM_001139456.2 68.6% 68.1% (many diffs)
9 human 136306 SVOPL SVOP like XM_005250143.3 68.6% 68.1% (many diffs)
10 mouse 320590 Svopl SV2 related protein homolog... NM_177200.4 60.4% 63% (many diffs)
11 mouse 320590 Svopl SV2 related protein homolog... XM_011241386.2 54.5% 56.6% (many diffs)
12 mouse 320590 Svopl SV2 related protein homolog... XM_017321644.1 20.3% 19.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1086
ORF length:
1020
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cgctggaagg ttaatcataa agactgaatt tttgcccacg aaataccgag
121gctatatgtt acccttgtct caggtgttct ggcttgcggg ctccctgctc atcattggct
181tggcctctgt gatcatcccc accatcgggt ggcgctggct cattcgcgtc gcctccatcc
241cgggcatcat cctcatcgtg gccttcaagt ttattcctga atctgcccgg ttcaatgtct
301ccactgggaa cactcgggct gccctggcca ctctggagcg cgttgccaag atgaaccgct
361cggtcatgcc ggaggggaag ctggtggagc ccgtcctgga aaaaagagga agatttgcag
421acctattgga tgctaaatat ttacggacca cattacagat ctgggtcata tggcttggaa
481tctcttttgc ctactatggg gttatcctgg ccagtgctga gctgctggag cgggacttgg
541tctgtggttc aaagtcagac tctgcggtgg tggtgactgg gggggactca ggggagagcc
601agagcccctg ctactgccac atgtttgcac cctctgacta tcggaccatg atcatcagca
661ccatcggtga aattgctttg aatcctttaa atatactggg catcaatttc ctgggaagac
721ggctgagcct ttctattacc atgggatgca cggctttatt cttccttctc ctcaacattt
781gcacttcaag tgccggccTG ATTGGCTTCC TCTTCATGCT GAGGGCTCTG GTAGCTGCAA
841ACTTCAACAC CGTCTACATT TACACAGCTG AGGTCTACCC CACCACGATG CGCGCTTTGG
901GGATGGGAAC CAGCGGCTCC CTGTGTCGCA TTGGTGCAAT GGTGGCGCCA TTTATATCCC
961AGGTTCTTAT GAGTGCATCA ATACTGGGGG CCCTGTGTCT CTTCTCATCT GTCTGTGTTG
1021TATGCGCCAT TTCTGCATTC ACTCTCCCCA TCGAAACCAA AGGACGGGCC CTCCAGCAAA
1081TTAAATGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1141TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1201CTTGGCTTTA TATATCTTGT GGAAAGGACG ATTACGGATG TACCCATGTA AGGACACGCG
1261TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)