Construct: ORF TRCN0000475228

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004001.1_s317c1
Derived from:
ccsbBroadEn_04465
DNA Barcode:
AAGCCTCAGTTCCTATAACTTGCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RERG (85004)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475228
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85004 RERG RAS like estrogen regulated... NM_032918.3 100% 100%
2 human 85004 RERG RAS like estrogen regulated... XM_017020121.2 93.7% 85.2% (many diffs)
3 human 85004 RERG RAS like estrogen regulated... NM_001190726.2 90.4% 90.4% 60_61ins57
4 mouse 232441 Rerg RAS-like, estrogen-regulate... NM_001164212.1 88.1% 98.4% (many diffs)
5 mouse 232441 Rerg RAS-like, estrogen-regulate... NM_181988.2 88.1% 98.4% (many diffs)
6 mouse 232441 Rerg RAS-like, estrogen-regulate... NM_001164214.1 79.3% 89.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
663
ORF length:
597
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc taaaagtgcg gaggtcaaac tggcaatatt tgggagagca ggcgtgggca
121agtcagctct tgtagtgaga tttctgacca aacggttcat ctgggaatat gatcccaccc
181tcgaatcaac ctaccgacac caagcaacca tcgatgatga agttgtttcc atggagatac
241tagacactgc tggtcaggaa gataccattc agagggaggg gcacatgcga tggggggaag
301gctttgtgct ggtctacgac attactgacc gaggaagttt tgaggaagtg ctgccactta
361agaacatcct agatgagatc aaaaagccca agaatgtgac tctcatcttg gttggaaaca
421aagctgactt ggaccactcc aggcaggtta gcacagaaga aggagagaag ctggCCACAG
481AATTGGCTTG TGCTTTTTAC GAGTGCTCTG CCTGCACTGG AGAAGGGAAC ATCACAGAGA
541TATTCTATGA ATTGTGTCGA GAGGTGCGTC GCCGGAGGAT GGTGCAGGGC AAGACGAGGC
601GACGCAGCTC CACCACGCAT GTCAAGCAAG CCATTAACAA GATGCTCACC AAAATCAGTA
661GTTATCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
721TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
781GGCTTTATAT ATCTTGTGGA AAGGACGAAA GCCTCAGTTC CTATAACTTG CGACGCGTTA
841AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)