Construct: ORF TRCN0000475285
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013844.1_s317c1
- Derived from:
- ccsbBroadEn_11694
- DNA Barcode:
- GCTAGACGGCAGACTTCTGGGTAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP11B (23200)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475285
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XM_011512594.2 | 16.7% | 16.1% | (many diffs) |
| 2 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XM_011512593.2 | 16.5% | 15.9% | (many diffs) |
| 3 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XM_005247241.2 | 16.4% | 15.8% | (many diffs) |
| 4 | human | 23200 | ATP11B | ATPase phospholipid transpo... | NM_014616.3 | 16.3% | 15.7% | (many diffs) |
| 5 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XR_001740067.1 | 6.5% | (many diffs) | |
| 6 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XR_001740066.1 | 6.4% | (many diffs) | |
| 7 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XR_001740068.1 | 6% | (many diffs) | |
| 8 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XM_006535574.2 | 21.2% | 21.5% | (many diffs) |
| 9 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XM_006535573.2 | 20.6% | 20.8% | (many diffs) |
| 10 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | NM_029570.3 | 15.2% | 15.4% | (many diffs) |
| 11 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XM_006535568.2 | 15% | 15.1% | (many diffs) |
| 12 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XM_006535567.2 | 14.9% | 15% | (many diffs) |
| 13 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XR_001783772.1 | 10.8% | (many diffs) | |
| 14 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XR_001783773.1 | 10.7% | (many diffs) | |
| 15 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XR_001783771.1 | 10.4% | (many diffs) | |
| 16 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XR_001783770.1 | 10.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 651
- ORF length:
- 585
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtg gcgctggatc cggcagcagc tgggttttga cccaccacat cagagtgaca 121 caagaaccat ctacgtagcc aacaggtttc ctcagaatgg cctttacaca cctcagaaat 181 ttatagataa caggatcatt tcatctaagt acactgtgtg gaattttgtt ccaaaaaatt 241 tatttgaaca gttcagaaga gtggcaAACT TTTATTTTCT TATTATATTT TTGGTTCAGC 301 TTATGATTGA TACACCTACC AGTCCAGTTA CCAGTGGACT TCCATTATTC TTTGTGATAA 361 CAGTAACTGC CATAAAGCAG GGATATGAAG ATTGGTTACG GCATAACTCA GATAATGAAG 421 TAAATGGAGC TCCTGTTTAT GTTGTTCGAA GTGGTGGCCT TGTAAAAACT AGATCAAAAA 481 ACATTCGGGT GGGTGATATT GTTCGAATAG CCAAAGATGA AATTTTTCCT GCAGACTTGG 541 TGCTTCTGTC CTCAGATCGA CTGGATGGTT CCTGTCACGT TACAACTGCT AGTTTGGACG 601 GAGAAACTAA CCTGAAGGTT TGCTTGCATA TGTTTGAGTA TTGCTCTTGG TGCCCAACTT 661 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 721 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 781 CTTGTGGAAA GGACGAGCTA GACGGCAGAC TTCTGGGTAC ACGCGTTAAG TCgacaatca 841 acctctggat tacaaaattt gtgaaagatt