Transcript: Human XM_011512594.2

PREDICTED: Homo sapiens ATPase phospholipid transporting 11B (putative) (ATP11B), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATP11B (23200)
Length:
12850
CDS:
257..3700

Additional Resources:

NCBI RefSeq record:
XM_011512594.2
NBCI Gene record:
ATP11B (23200)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011512594.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049934 CGGTACAAACTGCTTCATATT pLKO.1 1943 CDS 100% 13.200 10.560 N ATP11B n/a
2 TRCN0000313619 GCTTCGTGGAGCCAGATTAAA pLKO_005 985 CDS 100% 15.000 10.500 N Atp11b n/a
3 TRCN0000049933 CCACCCTTTATCGAGACATTA pLKO.1 3087 CDS 100% 13.200 9.240 N ATP11B n/a
4 TRCN0000101886 CGTAGGAGAATGAGTGTAATT pLKO.1 1982 CDS 100% 13.200 9.240 N Atp11b n/a
5 TRCN0000317117 CGTAGGAGAATGAGTGTAATT pLKO_005 1982 CDS 100% 13.200 9.240 N Atp11b n/a
6 TRCN0000101888 GCCTTTACACACCTCAGAAAT pLKO.1 351 CDS 100% 13.200 9.240 N Atp11b n/a
7 TRCN0000349913 TTTGCCTTGAGAACTCTATTT pLKO_005 8364 3UTR 100% 13.200 9.240 N Atp11b n/a
8 TRCN0000049935 GCTGCAAGAAACAGTGACTAT pLKO.1 2792 CDS 100% 4.950 3.465 N ATP11B n/a
9 TRCN0000049937 CCTAAATGTATAGGTGGAGAA pLKO.1 2063 CDS 100% 4.050 2.835 N ATP11B n/a
10 TRCN0000049936 GCTGTAATAGAATGCCAGCAA pLKO.1 872 CDS 100% 2.640 1.848 N ATP11B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011512594.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11694 pDONR223 100% 16.7% 16.1% None (many diffs) n/a
2 ccsbBroad304_11694 pLX_304 0% 16.7% 16.1% V5 (many diffs) n/a
3 TRCN0000475285 GCTAGACGGCAGACTTCTGGGTAC pLX_317 65.2% 16.7% 16.1% V5 (many diffs) n/a
4 ccsbBroadEn_11693 pDONR223 100% 6.3% 4.3% None (many diffs) n/a
5 ccsbBroad304_11693 pLX_304 0% 6.3% 4.3% V5 (many diffs) n/a
6 TRCN0000469581 TGTGTAATGGACCCAGCGTGCCCC pLX_317 100% 6.3% 4.3% V5 (many diffs) n/a
Download CSV