Construct: ORF TRCN0000475360

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001914.1_s317c1
Derived from:
ccsbBroadEn_13143
DNA Barcode:
TTTCTATCTAGTATCCCATTTACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
XIRP2 (129446)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475360
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 129446 XIRP2 xin actin binding repeat co... XM_017003309.1 3.8% 3.8% 1_9540del
2 human 129446 XIRP2 xin actin binding repeat co... NM_001199144.2 3.8% 3.8% 1_9597del
3 human 129446 XIRP2 xin actin binding repeat co... NM_152381.5 3.6% 3.6% 1_10263del
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
450
ORF length:
384
Sequence:
1tcttccattt caggtgtcGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG
61TTGGCATGGA TGCATTTGAG AGTCAAATTG TTGAGTCGAA GATGAAAACC TCTTCATCAC
121ATAGCTCAGA AGCTGGCAAA TCTGGCTGTG ACTTCAAGCA TGCCCCACCA ACCTATGAGG
181ATGTCATTGC TGGACATATT TTAGATATCT CTGATTCACC TAAAGAAGTA AGAAAAAATT
241TTCAAAAGAC GTGGCAAGAG AGTGGAAGAG TTTTTAAAGG CCTGGGATAT GCAACCGCAG
301ATGCTTCTGC AACTGAGATG AGAACCACCT TCCAAGAGGA ATCTGCATTT ATAAGTGAAG
361CTGCTGCTCC AAGACAAGGA AATATGTATA CTTTGTCAAA AGACAGTTTA TCCAATGGAG
421TGCCTAGTGG CAGACAAGCA GAATTTTCAT ACCCAACTTT CTTGTACAAA GTGGTTGATA
481TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
541CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATTTCT
601ATCTAGTATC CCATTTACGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
661tgaaagatt

Download FASTA (ORF) (Full)