Construct: ORF TRCN0000475412

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007641.1_s317c1
Derived from:
ccsbBroadEn_00955
DNA Barcode:
GAAGCACCAGATGCTTATTTCACT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SH2D1A (4068)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475412
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4068 SH2D1A SH2 domain containing 1A NM_002351.4 100% 100%
2 human 4068 SH2D1A SH2 domain containing 1A NM_001114937.2 97.6% 97.6% 335_336insAGGTACTAC
3 mouse 20400 Sh2d1a SH2 domain containing 1A NM_011364.4 84.8% 87.5% (many diffs)
4 mouse 20400 Sh2d1a SH2 domain containing 1A NM_001313689.1 83.3% 85.1% (many diffs)
5 mouse 20400 Sh2d1a SH2 domain containing 1A NM_001313688.1 74.8% 76% (many diffs)
6 mouse 20400 Sh2d1a SH2 domain containing 1A NM_001313691.1 54.9% 52.3% (many diffs)
7 mouse 20400 Sh2d1a SH2 domain containing 1A XM_017318440.1 54.9% 52.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
450
ORF length:
384
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga cgcagtggct gtgtatcatg gcaaaatcag cagggaaacc ggcgagaagc
121tcctgcttgc cactgggctG GATGGCAGCT ATTTGCTGAG GGACAGCGAG AGCGTGCCAG
181GCGTGTACTG CCTATGTGTG CTGTATCACG GTTACATTTA TACATACCGA GTGTCCCAGA
241CAGAAACAGG TTCTTGGAGT GCTGAGACAG CACCTGGGGT ACATAAAAGA TATTTCCGGA
301AAATAAAAAA TCTCATTTCA GCATTTCAGA AGCCAGATCA AGGCATTGTA ATACCTCTGC
361AGTATCCAGT TGAGAAGAAG TCCTCAGCTA GAAGTACACA AGGTACTACA GGGATAAGAG
421AAGATCCTGA TGTCTGCCTG AAAGCCCCAT GCCCAACTTT CTTGTACAAA GTGGTTGATA
481TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
541CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGAAGC
601ACCAGATGCT TATTTCACTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
661tgaaagatt

Download FASTA (ORF) (Full)