Construct: ORF TRCN0000475421
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016434.1_s317c1
- Derived from:
- ccsbBroadEn_13063
- DNA Barcode:
- GAGCAAGCGCGCCTGATCAGTACT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SSX2IP (117178)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475421
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_005270429.2 | 91% | 90.7% | (many diffs) |
| 2 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000235.2 | 91% | 90.7% | (many diffs) |
| 3 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000236.2 | 91% | 90.7% | (many diffs) |
| 4 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_024453015.1 | 91% | 90.7% | (many diffs) |
| 5 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166293.2 | 90.8% | 90.5% | (many diffs) |
| 6 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166417.2 | 90.8% | 90.5% | (many diffs) |
| 7 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_014021.4 | 90.8% | 90.5% | (many diffs) |
| 8 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_005270427.2 | 90.8% | 90.5% | (many diffs) |
| 9 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_005270428.2 | 90.8% | 90.5% | (many diffs) |
| 10 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000234.2 | 90.8% | 90.5% | (many diffs) |
| 11 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_024453018.1 | 90.1% | 89.4% | (many diffs) |
| 12 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_011540612.2 | 90% | 89.2% | (many diffs) |
| 13 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000237.2 | 86.6% | 86.2% | (many diffs) |
| 14 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166294.2 | 86.4% | 86.1% | (many diffs) |
| 15 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166295.1 | 86.4% | 86.1% | (many diffs) |
| 16 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_006710331.2 | 86.4% | 86.1% | (many diffs) |
| 17 | human | 117178 | SSX2IP | SSX family member 2 interac... | XR_946540.1 | 29% | (many diffs) | |
| 18 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_001253768.1 | 77.4% | 81.4% | (many diffs) |
| 19 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_001253769.1 | 77.4% | 81.4% | (many diffs) |
| 20 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_001253770.1 | 77.4% | 81.4% | (many diffs) |
| 21 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_138744.3 | 77.2% | 81.3% | (many diffs) |
| 22 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | XM_006502404.3 | 77.2% | 81.3% | (many diffs) |
| 23 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | XM_006502405.3 | 77.2% | 81.3% | (many diffs) |
| 24 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | XM_006502406.3 | 77.2% | 81.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1743
- ORF length:
- 1677
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg agattggatg actgttacag atccaggtct gtcttcagaa agcaaaacta 121 tctctcaata tacctcagaa acaaagatgt ctccatcaag tttatactca cagcaagtgc 181 tatgttcttc aataccttta tcgaaaaatg tgcacagttt tttcagtgcc ttctgcacag 241 aagataatat tgaacagagt atctcatatc ttgatcagga attgactact tttggttttc 301 cttcattata tgaagaatcc aaaggtaaag agacaaagag agagttaaat atagtagctg 361 tactaaattg tatgaatgag ctgcttgtgc ttcagcggaa gaaccttcta gctcaggaaa 421 atgtggagac acagaatttg aagctgggaa gtgatatgga ccatctacag agctgctact 481 caaaacttaa ggaacaactg gaaacctcca ggagggaaat gattgggctt caggaaagag 541 acagacagtt acaatgtaag aacaggaatt tgcatcagct actaaagaat gagaaagatg 601 aggtgcaaaa attacaaaat atcattgcaa gtcgagctac tcagtataat catgatatga 661 agagaaaaga gcgtgaatat aataaactga aggaacgtct acatcaactt gttatgaaca 721 agaaagataa gaaaatagct atggacattt tgaattatgt cgggagagct gatggaaaaa 781 gaggctcctg gaggactggt aaaactgaag ccaggaatga agatgaaatg tataaaattc 841 tcttgaatga ttatgaatat cgtcagaaac aaatcctaat ggaaaatgca gaacttaaga 901 aggttcttca acaaatgaaa aaggaaatga tttctcttct ttctccccaa aagaagaaac 961 ctagagaaag agtagatgat agtacaggaa ctgttatttc cgatgttgaa gaagatgccg 1021 gggaactaag cagagagagt atgtgggacc tttcctgtga aactgtgaga gagcagctta 1081 caaacagcat cagaaaacag tggagaattt tgaaaagtca tgtagaaaag cttgataacc 1141 aagtttcaaa ggtacacctg gaaggtttta atgatgaaga tgtaatctca cgacaagacc 1201 atgaacaaga aactgaaaaa ctcgagttag aaattcagca gtgtaaagaa atgattaaaa 1261 cTCAGCAACA GCTTTTACAG CAGCTCGCTA CTGCATATGA TGATGATACC ACTTCACTAT 1321 TACGAGACTG TTATTTGTTG GAAGAAAAGG AACGTCTCAA AGAAGAATGG TCCCTTTTTA 1381 AAGAGCAGAA AAAGAATTTT GAGAGGGAGA GACGAAGCTT TACAGAAGCC GCTATTCGCC 1441 TGGGATTGGA GAGAAAGGCA TTTGAAGAAG AAAGAGCCAG TTGGTTAAAG CAGCAGTTTC 1501 TAAATATGAC TACCTTTGAC CACCAGAACT CAGAAAATGT GAAACTTTTC AGTGCCTTCT 1561 CAGGAAGTTC TGATTGGGAC AATCTTATAG TGCACTCGAG GCAGCCGCAA AAGAAGCCTC 1621 ACAGTGTGTC TAATGGGTCT CCAGTTTGCA TGTCTAAACT TACTAAATCT CTTCCTGCTT 1681 CACCTTCCAC TTCAGACTTT TGCCAGACAC GTTCCTGCAT ATCTGAACAT AGGGCAAAGA 1741 ACTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 1801 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 1861 GGCTTTATAT ATCTTGTGGA AAGGACGAGA GCAAGCGCGC CTGATCAGTA CTACGCGTTA 1921 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt