Construct: ORF TRCN0000475453

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009829.1_s317c1
Derived from:
ccsbBroadEn_10926
DNA Barcode:
AGAGTCCTTCGAAGATTGCCAAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ITGA9 (3680)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475453
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3680 ITGA9 integrin subunit alpha 9 NM_002207.3 60.2% 59.3% (many diffs)
2 mouse 104099 Itga9 integrin alpha 9 NM_133721.2 51.8% 52.9% (many diffs)
3 mouse 104099 Itga9 integrin alpha 9 XM_006511918.3 34.1% 34.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1962
ORF length:
1896
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg cggcccggct gcgccgaggg gcgccgggag gctccgcgcg ctgctgctgg
121cgctggtggt cgcggggatc cccgcgggcg cctacaacct cgacccgcag cgccccgtgc
181acttccaggg ccccgctgac tcgttcttcg gctacgcagt tctggagcat ttccacgaca
241acacgcgctg ggtccttgtg ggcgcaccaa aggcagattc caaatacagc ccttcagtga
301agtctcctgg ggctgtgttt aagtgccgtg ttcacaccaa ccctgaccgg agatgcaccg
361aactggacat ggctcgaggg aagaatcggg gcacgtcctg cggaaagacc tgccgggaag
421accgcgatga tgagtggatg ggggtgagcc tggcccgaca gcccaaggct gatggccgtg
481tgttggcctg tgctcatcgc tggaagaaca tctactatga agccgaccac atcctacccc
541atggcttctg ctacatcatc ccctccaacc tccaggccaa aggcaggacg ctgatccctt
601gctatgaaga gtataagaag aagtacggag aggaacacgg ctcctgccag gctgggatag
661cgggcttctt caccgaggag ctggtggtga tgggtgctcc agggtcattt tattgggctg
721gaaccatcaa agtgctgaac cttacggaca acacctattt aaaactgaac gacgaagtga
781tcatgaacag gcggtacacc tacctgggct acgcagtgac cgctggccac ttctctcacc
841cgtccaccat tgatgtggta ggaggtgccc cacaggacaa aggcatcggc aaggtttata
901ttttcagagc tgaccgaaga tcaggcacct taattaagat ctttcaagca tcaggtaaaa
961agatgggctc ttacttcggc tcctccttgt gcgcagttga cctgaatggg gacggcctct
1021ctgacctgct ggtgggggcc cccatgtttt ctgagatcag ggatgaggga caggtcactg
1081tctacatcaa cagaggaaat ggagccctcg aggagcagct ggctctgact ggggatggtg
1141cctacaatgc gcactttgga gagagcattg ccagcctgga cgatctggac aatgatgggt
1201tcccagatgt ggccattggt gcacccaagg aggatgactt cgcaggggcg gtctatatct
1261atcatggtga tgccggtggg atagtccctc agtactcaat gaaactgtct gggcagaaga
1321taaatccagt gctccggatg tttggtcagt ccatatcggg aggcattgat atggatggaa
1381atggctatcc tgatgtcact gttggagcct tcatgtccga cagcgtggtt cttctcagag
1441caaggcctgt cattacggtg gatgtctcca tcttcctccc gggctccatc aacatcacag
1501cgcctcagtg tcacgacgga cagcagcctg tgaactgcct gaacgtcacc acctgcttca
1561gcttccatgg caaacacgtt ccagaagaga ttggccTGAA TTATGTTCTG ATGGCTGACG
1621TGGCCAAAAA GGAGAAGGGC CAGATGCCCA GGGTCTACTT TGTGCTGCTG GGAGAGACCA
1681TGGGTCAGGT CACAGAGAAG CTGCAGCTGA CTTACATGGA GGAGACGTGT CGTCACTATG
1741TGGCCCATGT GAAGCGGAGG GTGCAGGACG TCATCAGCCC GATCGTGTTT GAAGCAGCCT
1801ACAGCCTCAG TGAGCATGTG ACTGGAGAGG AGGAGAGGGA ACTGCCGCCT CTGACACCAG
1861TTCTCCGCTG GAAAAAGGGA CAAAAGATTG CCCAAAAGAA TCAGGTCAGA ACCTTAAAGC
1921TCATACTCAG CACCCAAGGT GGCAGCTGCA CAGAGCAGAA ATACCCAACT TTCTTGTACA
1981AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2041AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2101AGGACGAAGA GTCCTTCGAA GATTGCCAAG CACGCGTTAA GTCgacaatc aacctctgga
2161ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)