Construct: ORF TRCN0000475483

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018098.1_s317c1
Derived from:
ccsbBroadEn_11574
DNA Barcode:
CCATGCAACCCGCGGTTATATAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AP3M2 (10947)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475483
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10947 AP3M2 adaptor related protein com... NM_001134296.1 64.1% 63.7% (many diffs)
2 human 10947 AP3M2 adaptor related protein com... NM_006803.4 64.1% 63.7% (many diffs)
3 human 10947 AP3M2 adaptor related protein com... XM_017012977.2 64.1% 63.7% (many diffs)
4 human 10947 AP3M2 adaptor related protein com... XR_001745459.2 22.2% (many diffs)
5 mouse 64933 Ap3m2 adaptor-related protein com... NM_001122820.1 56.8% 63% (many diffs)
6 mouse 64933 Ap3m2 adaptor-related protein com... NM_029505.3 56.8% 63% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
885
ORF length:
819
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat ccatagtctt ttcttgatca actcctctgg agacattttc ctggagaaac
121attggaaaag tgtggtcagc cgttctgttt gtgattactt ttttgaggcg caagagagag
181ctactgaggc agaaaatgtg cctccggtta tccctacccc tcaccactat ctcttaagtg
241tttaccgcca caagatcttt tttgtggccg tgatccagac ggaggtcccc cctctgtttg
301tcattgagtt tcttcaccga gtggtggaca catttcagga ttattttgga gtctgttcag
361agccagtgat caaagacaat gtagttgtgg tttatgaggt attggaagag atgcttgaca
421atggttttcc attggctacc gagtcgaaca ttcttaaaga actcataaag cctcctacca
481tccttcgaac ggttgtcaac accatcacag gaagcacgaa tgtgggtgac cagcttccca
541ctgGGCAGCT GTCAGTGGTG CCTTGGCGAC GGACTGGGGT GAAATATACC AACAATGAGG
601CCTATTTTGA TGTGATTGAA GAGATTGATG CAATTATTGA TAAATCAGGC TCCACAATTA
661CTGCTGAGAT CCAGGGGGTG ATTGATGCCT GTGTCAAGCT GACTGGCATG CCAGACCTTA
721CACTTTCCTT CATGAACCCT AGGTTGTTGG ATGATGTCAG CTTCCATCCT TGTGTTCGTT
781TCAAACGCTG GGAATCTGAG CGCATCCTCT CCTTCATCCC TCCTGATGGA AACTTCCGCC
841TGCTGTCTTA CCATGTCAGT GCACAGAAAT GCTGTCTTGG GATGTACCCA ACTTTCTTGT
901ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
961AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1021GAAAGGACGA CCATGCAACC CGCGGTTATA TAATACGCGT TAAGTCgaca atcaacctct
1081ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)