Transcript: Mouse NM_001122820.1

Mus musculus adaptor-related protein complex 3, mu 2 subunit (Ap3m2), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Ap3m2 (64933)
Length:
3467
CDS:
212..1468

Additional Resources:

NCBI RefSeq record:
NM_001122820.1
NBCI Gene record:
Ap3m2 (64933)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001122820.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000363974 CACCGAGTAGTGGATACATTT pLKO_005 461 CDS 100% 13.200 18.480 N Ap3m2 n/a
2 TRCN0000111619 CTACGATTAACCTGCAGTTTA pLKO.1 1323 CDS 100% 13.200 18.480 N Ap3m2 n/a
3 TRCN0000380396 TGATAAAGCCTCCCACTATTC pLKO_005 609 CDS 100% 10.800 15.120 N Ap3m2 n/a
4 TRCN0000348267 TACCAACAACGAGGCCTATTT pLKO_005 733 CDS 100% 0.000 0.000 N Ap3m2 n/a
5 TRCN0000380152 GGTGATCGATGCCTGTGTTAA pLKO_005 823 CDS 100% 13.200 9.240 N Ap3m2 n/a
6 TRCN0000348339 CTCCGTCTTCAGCCACATAAG pLKO_005 1591 3UTR 100% 10.800 7.560 N Ap3m2 n/a
7 TRCN0000364017 GTTCCGAGCCAGTGATCAAAG pLKO_005 501 CDS 100% 10.800 7.560 N Ap3m2 n/a
8 TRCN0000111617 CCGCCTCTGTTTGTCATTGAA pLKO.1 434 CDS 100% 5.625 3.938 N Ap3m2 n/a
9 TRCN0000111616 CCAGATGAGAACCCTACGATT pLKO.1 1310 CDS 100% 4.950 3.465 N Ap3m2 n/a
10 TRCN0000111618 CCTACGATTAACCTGCAGTTT pLKO.1 1322 CDS 100% 4.950 3.465 N Ap3m2 n/a
11 TRCN0000334574 CCTACGATTAACCTGCAGTTT pLKO_005 1322 CDS 100% 4.950 3.465 N Ap3m2 n/a
12 TRCN0000379436 GGGTGAAATATACCAACAATG pLKO_005 723 CDS 100% 10.800 15.120 N AP3M2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001122820.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11574 pDONR223 100% 56.8% 63% None (many diffs) n/a
2 ccsbBroad304_11574 pLX_304 0% 56.8% 63% V5 (many diffs) n/a
3 TRCN0000475483 CCATGCAACCCGCGGTTATATAAT pLX_317 41.9% 56.8% 63% V5 (many diffs) n/a
Download CSV