Construct: ORF TRCN0000475518

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002083.1_s317c1
Derived from:
ccsbBroadEn_10525
DNA Barcode:
ATAGGTTCCCGGATTGCGTTTCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TXNDC5 (81567)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475518
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81567 TXNDC5 thioredoxin domain containi... NM_001145549.3 89.9% 90% 0_1ins108;966C>T
2 human 81567 TXNDC5 thioredoxin domain containi... NM_030810.5 81.7% 78.9% (many diffs)
3 human 100526836 BLOC1S5-TXNDC5 BLOC1S5-TXNDC5 readthrough ... NR_037616.1 32.1% 1_375del;1449C>T;1456_3352del
4 mouse 105245 Txndc5 thioredoxin domain containi... NM_001289599.1 82.2% 84.7% (many diffs)
5 mouse 105245 Txndc5 thioredoxin domain containi... NM_001289598.1 76.6% 79.1% (many diffs)
6 mouse 105245 Txndc5 thioredoxin domain containi... NM_145367.4 72.9% 73.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1146
ORF length:
1080
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac tcagtctgta gactccaaca gagggaacag gaacgaaaaa aggtgtggac
121actgccagcg gctgcagccg acttggaatg acctgggaga caaatacaac agcatggaag
181atgccaaagt ctatgtggct aaagtggact gcacggccca ctccgacgtg tgctccgccc
241agggggtgcg aggatacccc accttaaagc ttttcaagcc aggccaagaa gctgtgaagt
301accagggtcc tcgggacttc cagacactgg aaaactggat gctgcagaca ctgaacgagg
361agccagtgac accagagccg gaagtggaac cgcccagtgc ccccgagctc aagcaagggc
421tgtatgagct ctcagcaagc aactttgagc tgcacgttgc acaaggcgac cactttatca
481agttcttcgc tccgtggtgt ggtcactgca aagccctggc tccaacctgg gagcagctgg
541ctctgggcct tgaacattcc gaaactgtca agattggcaa ggttgattgt acacagcact
601atgaactctg ctccggaaac caggttcgtg gctatcccac tcttctctgg ttccgagatg
661ggaaaaaggt ggatcagtac aagggaaagc gggatttgga gtcactgagg gagtacgtgg
721agtcgcagct gcagcgcaca gagactggag cgacggagac cgtcacgccc tcagaggccc
781cggtgctggc agctgagccc gaggctgaca agggcactgt gttGGCACTC ACTGAAAATA
841ACTTCGATGA CACCATTGCA GAAGGAATAA CCTTCATCAA GTTTTATGCT CCATGGTGTG
901GTCATTGTAA GACTCTGGCT CCTACTTGGG AGGAACTCTC TAAAAAGGAA TTCCCTGGTC
961TGGCGGGGGT CAAGATCGCC GAAGTAGACT GCACTGCTGA ACGGAATATC TGCAGCAAGT
1021ATTCGGTACG AGGCTACCCC ACGTTATTGC TTTTCCGAGG AGGGAAGAAA GTCAGTGAGC
1081ACAGTGGAGG CAGAGACCTT GACTCGTTAC ACCGCTTTGT CCTGAGCCAA GCGAAAGATG
1141AACTTTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1201TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1261CTTGGCTTTA TATATCTTGT GGAAAGGACG AATAGGTTCC CGGATTGCGT TTCCTACGCG
1321TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)