Construct: ORF TRCN0000475527

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003722.1_s317c1
Derived from:
ccsbBroadEn_07477
DNA Barcode:
AGTTTAGGTATCGGTATTCACGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SART3 (9733)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475527
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9733 SART3 spliceosome associated fact... NM_014706.4 99.8% 100% 108G>A;1884T>C;2661G>A
2 human 9733 SART3 spliceosome associated fact... XM_005269241.5 98% 98.1% (many diffs)
3 human 9733 SART3 spliceosome associated fact... XM_024449284.1 68.4% 68.9% (many diffs)
4 mouse 53890 Sart3 squamous cell carcinoma ant... NM_016926.1 83.1% 87% (many diffs)
5 mouse 53890 Sart3 squamous cell carcinoma ant... XM_006530405.1 81.6% 85.4% (many diffs)
6 mouse 53890 Sart3 squamous cell carcinoma ant... XM_006530406.1 70.7% 74.9% (many diffs)
7 mouse 53890 Sart3 squamous cell carcinoma ant... XM_017320991.1 49.6% 51.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2958
ORF length:
2889
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgactgcg gccgaaacct cggcttcaga acccgaggct gagtccaagg
121ctgggcccaa ggctgacgga gaggaggatg aggttaaggc ggctaggaca aggagaaagg
181tgttatcgcg ggctgtggcc gctgcgacat acaagaccat ggggccagcg tgggatcagc
241aggaggaagg cgtgagcgag agcgatgggg atgagtacgc catggcttcc tccgcggaga
301gctcccccgg ggagtacgag tgggaatatg acgaagagga ggagaaaaac cagctggaga
361ttgagagact ggaggagcag ttgtctatca acgtctatga ctacaactgc catgtggact
421tgatcagact gctcaggctg gaaggggagc ttaccaaggt gaggatggcc cgccagaaga
481tgagtgaaat ctttcccttg actgaagagc tctggctgga gtggctgcat gacgagatca
541gcatggccca ggatggcctg gacagagagc acgtgtatga cctctttgag aaagccgtga
601aggattacat ttgtcctaac atttggctag agtatggcca gtactcagtt ggtgggattg
661gtcagaaagg tggccttgag aaagttcgct ccgtgtttga aagggctctc tcgtctgttg
721gtttacatat gaccaaagga ctcgccctct gggaggctta ccgagagttt gaaagtgcga
781ttgtggaagc tgctcggctt gagaaagtcc acagtctttt ccggcgacag ttggcgatcc
841cactctatga tatggaggcc acatttgcag agtatgaaga atggtcagaa gacccaatac
901cagagtcagt aattcagaac tataacaaag cactacagca gctggagaaa tataaaccct
961atgaagaagc actgttgcag gcagaggcac caaggctggc agaatatcaa gcatatatcg
1021attttgagat gaaaattggc gatcctgctc gcattcagtt gatctttgag cgcgccctgg
1081tcgagaactg ccttgtccca gacttatgga tccgttacag tcagtaccta gatcgacaac
1141tgaaagtaaa ggatttggtt ttatctgtac ataaccgcgc tattagaaac tgcccctgga
1201cagttgcctt atggagtcgg tacctcttgg ccatggagag acatggagtt gatcatcaag
1261taatttctgt aaccttcgag aaagctttga atgccggctt catccaggcc actgattatg
1321tggagatttg gcaggcatac cttgattacc tgaggagaag ggttgatttc aaacaagact
1381ccagtaaaga gctggaggag ttgagggccg cctttactcg tgccttggag tatctgaagc
1441aggaggtgga agagcgtttc aatgagagtg gtgatccaag ctgcgtgatt atgcagaact
1501gggctaggat tgaggctcga ctgtgcaata acatgcagaa agctcgggaa ctctgggata
1561gcatcatgac cagaggaaat gccaagtacg ccaacatgtg gctagagtat tacaacctgg
1621aaagagctca tggtgacacc cagcactgcc ggaaggctct gcaccgggcc gtccagtgca
1681ccagtgacta cccagagcac gtctgcgaag tgttactcac catggagagg acagaaggtt
1741ctttagaaga ttgggatata gctgttcaga aaactgaaac ccgattagct cgtgtcaatg
1801agcagagaat gaaggctgca gagaaggaag cagcccttgt gcagcaagaa gaagaaaagg
1861ctgaacaacg gaaaagagct cgggctgaga agaaagcgtt aaaaaagaag aaaaagatca
1921gaggcccaga gaagcgcgga gcagatgagg acgatgagaa agagtggggc gatgatgaag
1981aagagcagcc ttccaaacgc agaagggtcg agaacagcat ccctgcagct ggagaaacac
2041aaaatgtaga agtagcagca gggcccgctg ggaaatgtgc tgccgtagat gtggagcccc
2101cttcgaagca gaaggagaag gcagcctccc tgaagaggga catgcccaag gtgctgcacg
2161acagcagcaa ggacagcatc accgtctttg tcagcaacct gccctacagc atgcaggagc
2221cggacacgaa gctcaggcca ctcttcgagg cctgtgggga ggtggtccag atccgaccca
2281tcttcagcaa ccgtggggat ttccgaggtt actgctacgt ggagtttaaa gaagagaaat
2341cagcccttca ggcactggag atggaccgga aaagtgtaga agggaggcca atgtttgttt
2401ccccctgtgt ggataagagc aaaaaccccg attttaaggt gttcaggtac agcacttccc
2461tagagaaaca caagctgttc atctcaggcc tgcctttctc ctgtactaaa gaggaactag
2521aagaaatctg taaggctcat ggcaccgtga aggacctcag gctggtcacc aaccgggctg
2581gcaaaccaaa gggcctggcc tacgtggagt atgaaaatga atcccaggcg tcgcaggctg
2641tgatgaagat ggacggcatg actatcaaag agaacatcat caaagtggca atcagcaacc
2701ctccTCAGAG GAAAGTTCCA GAGAAGCCAG AGACCAGGAA GGCACCAGGT GGCCCCATGC
2761TTTTGCCGCA GACATACGGA GCGAGGGGGA AGGGAAGGAC GCAGCTGTCT CTACTGCCTC
2821GTGCCCTGCA GCGCCCAAGT GCTGCAGCTC CTCAGGCTGA GAACGGCCCT GCCGCGGCTC
2881CTGCAGTTGC CGCCCCAGCA GCCACCGAGG CACCCAAGAT GTCCAATGCC GATTTTGCCA
2941AGCTGTTTCT GAGAAAGTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
3001TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
3061GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAAGTTTAG GTATCGGTAT
3121TCACGTGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)