Construct: ORF TRCN0000475640

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007719.1_s317c1
Derived from:
ccsbBroadEn_10143
DNA Barcode:
AACCTGAAGTGCTCCCGGAGCTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CUEDC1 (404093)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475640
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 404093 CUEDC1 CUE domain containing 1 NM_001271875.2 100% 100%
2 human 404093 CUEDC1 CUE domain containing 1 NM_001292025.1 100% 100%
3 human 404093 CUEDC1 CUE domain containing 1 XM_017024640.2 92.7% 92.7% 782_783ins84
4 human 404093 CUEDC1 CUE domain containing 1 XM_017024641.2 71.4% 57.6% 0_1ins295;169_217del
5 human 404093 CUEDC1 CUE domain containing 1 XM_011524812.2 65.2% 58.1% 0_1ins370;94_142del
6 human 404093 CUEDC1 CUE domain containing 1 XR_934459.3 35.6% 1_377del;1471_1489del;1555_3248del
7 human 404093 CUEDC1 CUE domain containing 1 XR_001752509.2 34.6% 1_377del;1470_1585del;1652_3345del
8 human 404093 CUEDC1 CUE domain containing 1 XR_934460.3 34.5% (many diffs)
9 mouse 103841 Cuedc1 CUE domain containing 1 NM_198013.3 83.7% 86.4% (many diffs)
10 mouse 103841 Cuedc1 CUE domain containing 1 NM_001172099.1 83.2% 85.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1224
ORF length:
1158
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac cagcctgttc cgccggagca gcagcggcag cggcgggggt ggcaccgccg
121gggcacgcgg gggcggggga ggcacggccg ccccccagga gctcaacaac agccggcctg
181cccgccaggt gcgccgcctg gagttcaacc aggccatgga cgacttcaag accatgttcc
241ccaacatgga ttacgacatc atcgaatgcg tgctgcgcgc caacagcggc gctgtggacg
301ccaccatcga ccagctgctg cagatgaacc tggagggcgg tggcagcagc ggcggcgtct
361atgaggacag ctccgactcg gaggacagca tccccccgga gatcttggaa aggactttgg
421aacctgatag ctcggatgaa gagcccccac ctgtgtactc cccgccagcc taccacatgc
481acgtgttcga ccggccctac cctctggctc ccccgactcc gcctccccgt atcgacgcgc
541tgggctctgg agcccctaca agccagagac gctatcggaa ctggaaccca ccactgctgg
601gcaaccttcc ggatgacttt ctccgcatcc tgccccagca gctggacagc atacagggta
661acgctggggg ccccaagcct gggagtggag agggatgtcc acctgccatg gctgggccag
721ggcccggaga ccaggagagc cgctggaagc agtacctgga ggacgagagg atcgcgcttt
781tcctgcagaa cgaggagttc atgaaggagc tgcaacggaa ccgcgacttc ctcctcgctc
841tggagagaga tcgattgaaa tacgaatccc agaaatctaa atccagcagc gtggctgtcg
901gaaacgactt tggcttttcc tctcctgtcc caggaactgg cgacgccaac cccgctgtgt
961ctgaagatgc cttattcagg gacaagctga aacacatggg aaagtccacc cggaggaaac
1021tgtttgaact tgcccgagcc TTCTCAGAGA AGACCAAAAT GAGGAAGTCA AAGAGGAAAC
1081ACTTGTTGAA GCATCAGTCG CTGGGGGCTG CCGCGTCAAC AGCCAACCTC CTGGATGATG
1141TGGAGGGCCA CGCGTGTGAT GAAGACTTCC GGGGCAGGCG TCAGGAGGCA CCCAAGGTGG
1201AGGAAGGCCT GCGAGAAGGA CAGTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1261AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1321TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA ACCTGAAGTG
1381CTCCCGGAGC TAGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1441att

Download FASTA (ORF) (Full)