Construct: ORF TRCN0000475724
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005115.1_s317c1
- Derived from:
- ccsbBroadEn_12274
- DNA Barcode:
- CTCCGCAAGCTAGGATTTTGTAAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF415 (55786)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475724
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352147.1 | 100% | 100% | |
| 2 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352148.1 | 100% | 100% | |
| 3 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352149.1 | 100% | 100% | |
| 4 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_006723279.1 | 100% | 100% | |
| 5 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026968.1 | 100% | 100% | |
| 6 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026969.1 | 95.5% | 92.7% | (many diffs) |
| 7 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001136038.3 | 95.2% | 92.9% | (many diffs) |
| 8 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352142.1 | 95.2% | 92.9% | (many diffs) |
| 9 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352143.1 | 95.2% | 92.9% | (many diffs) |
| 10 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352144.1 | 95.2% | 92.9% | (many diffs) |
| 11 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001164309.2 | 94.9% | 92.9% | (many diffs) |
| 12 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352146.1 | 94.9% | 92.9% | (many diffs) |
| 13 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_018355.3 | 94.9% | 92.9% | (many diffs) |
| 14 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026964.1 | 94.9% | 92.9% | (many diffs) |
| 15 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026971.1 | 92.9% | 92.9% | 94_216del |
| 16 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_024451601.1 | 92.9% | 92.9% | 94_216del |
| 17 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352138.1 | 92.6% | 88.9% | (many diffs) |
| 18 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352139.1 | 92.6% | 88.9% | (many diffs) |
| 19 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352140.1 | 92.6% | 88.9% | (many diffs) |
| 20 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352141.1 | 92.6% | 88.9% | (many diffs) |
| 21 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026970.1 | 92.6% | 88.9% | (many diffs) |
| 22 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352136.1 | 91.7% | 91.7% | 1_147del |
| 23 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352137.1 | 91.7% | 91.7% | 1_147del |
| 24 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_011527101.2 | 91.7% | 91.7% | 1_147del |
| 25 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026961.1 | 91.3% | 87.2% | 1_55del;149_246del |
| 26 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001330766.1 | 89.8% | 85.7% | 1_85del;179_276del |
| 27 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352132.1 | 89.8% | 85.7% | 1_85del;179_276del |
| 28 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352133.1 | 89.8% | 85.7% | 1_85del;179_276del |
| 29 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352134.1 | 89.8% | 85.7% | 1_85del;179_276del |
| 30 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026956.1 | 89.8% | 85.7% | 1_85del;179_276del |
| 31 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026957.1 | 89.8% | 85.7% | 1_85del;179_276del |
| 32 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_017026960.1 | 89.8% | 85.7% | 1_85del;179_276del |
| 33 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352135.1 | 88.5% | 85.8% | (many diffs) |
| 34 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352130.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 35 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352131.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 36 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_006723267.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 37 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_024451596.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 38 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_024451597.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 39 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_024451598.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 40 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_024451599.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 41 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_024451600.1 | 85.7% | 85.7% | 1_147del;241_363del |
| 42 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_024451595.1 | 79.9% | 79.9% | 1_285del;379_501del |
| 43 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001330759.1 | 59.9% | 59.9% | 0_1ins651 |
| 44 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352150.1 | 59.9% | 59.9% | 0_1ins651 |
| 45 | human | 55786 | ZNF415 | zinc finger protein 415 | NM_001352151.1 | 59.9% | 59.9% | 0_1ins651 |
| 46 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_006723280.3 | 59.9% | 59.9% | 0_1ins651 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1692
- ORF length:
- 1626
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtg ggagcacagg aaagagccct ggaccataga aagccaagta cgagtagcaa 121 gaaaaccaaa agggtgggaa tggatcaaag gtgtgaaaac agatctgtct cgtaactgtg 181 taatcaagga actagcacca caacaggaag gtaacccagg agaagtattc cacacagtga 241 cattggaaca acatgaaaaa catgacattg aagagttttg cttcagggaa atcaagaaaa 301 aaatacacga ctttgactgt cagtggagag atgatgaaag aaattgcaac aaagtgacta 361 cggccccaaa agaaaatctt acttgtagga gagaccaacg cgatagaaga ggtataggaa 421 acaagtctat taaacatcag cttggattaa gctttctacc acatccccat gaactgcagc 481 agtttcaagc tgaagggaaa atttatgaat gtaaccatgt tgagaagtct gtcaaccatg 541 gttcctcagt ttcaccaccc caaataattt cttctaccat caaaacccat gtttctaata 601 aatatgggac tgatttcatc tgttcttcat tactcacaca agaacagaaa tcatgcatta 661 gggaaaaacc ttacagatat attgagtgcg acaaagcctt gaatcatggc tcacacatga 721 ctgtacgtca ggtaagtcat tctggagaga aaggatataa atgtgatctg tgtggcaagg 781 tctttagtca aaaatcaaac cttgcgcgtc attggagagt tcatactgga gagaaaccat 841 acaaatgtaa tgaatgtgac agaagtttca gtcgcaactc atgccttgca ctacatcgga 901 gagttcacac tggagagaaa ccttacaaat gttatgagtg tgacaaggtc ttcagtcgaa 961 attcatgcct tgcactacat cagaaaactc atattggaga gaaaccttac acatgtaaag 1021 agtgtggcaa agcctttagt gtgaggtcaa cacttaccaa ccatcaggta attcatagtg 1081 gcaagaaacc ttacaaatgc aatgaatgtg gcaaggtgtt cagtcagact tcaagccttg 1141 caactcatca gagaattcac actggggaga aaccatacaa gtgtaatgaa tgtggtaaag 1201 tcttcagtca gacttcaagc cttgcaaggc attggagaat tcatactgga gagaaacctt 1261 acaaatgcaa tgaatgtggt aaggttttca gttacaattc acaccttgcg agtcatcgga 1321 gagttcatac tggagagaaa CCTTACAAGT GTAATGAGTG TGGGAAAGCC TTTAGTGTGC 1381 ATTCGAACTT AACTACCCAT CAGGTCATCC ATACTGGAGA GAAGCCTTAC AAATGTAATC 1441 AATGTGGCAA AGGCTTCAGT GTGCATTCAA GCCTAACTAC CCATCAGGTC ATCCATACTG 1501 GAGAAAAACC TTACAAATGT AATGAGTGTG GCAAATCCTT TAGTGTGCGC CCAAACCTCA 1561 CTAGACATCA GATAATCCAT ACTGGAAAGA AACCTTACAA ATGTAGTGAT TGTGGGAAGT 1621 CCTTTAGTGT GCGCCCAAAC CTCTTCAGAC ATCAAATTAT CCATACTAAG GAGAAACCTT 1681 ATAAAAGAAA TTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 1741 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 1801 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACTC CGCAAGCTAG GATTTTGTAA 1861 CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t