Construct: ORF TRCN0000475808
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005505.1_s317c1
- Derived from:
- ccsbBroadEn_06536
- DNA Barcode:
- TCTACGACGATTGCGTAGTACTTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LPP (4026)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475808
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4026 | LPP | LIM domain containing prefe... | NM_001167671.2 | 99.7% | 99.8% | (many diffs) |
| 2 | human | 4026 | LPP | LIM domain containing prefe... | NM_005578.4 | 99.7% | 99.8% | (many diffs) |
| 3 | human | 4026 | LPP | LIM domain containing prefe... | XM_005247446.4 | 99.7% | 99.8% | (many diffs) |
| 4 | human | 4026 | LPP | LIM domain containing prefe... | XM_005247450.5 | 99.7% | 99.8% | (many diffs) |
| 5 | human | 4026 | LPP | LIM domain containing prefe... | XM_005247451.4 | 99.7% | 99.8% | (many diffs) |
| 6 | human | 4026 | LPP | LIM domain containing prefe... | XM_005247453.2 | 99.7% | 99.8% | (many diffs) |
| 7 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512820.3 | 99.7% | 99.8% | (many diffs) |
| 8 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512827.2 | 99.7% | 99.8% | (many diffs) |
| 9 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512828.3 | 99.7% | 99.8% | (many diffs) |
| 10 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512831.3 | 99.7% | 99.8% | (many diffs) |
| 11 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512833.2 | 99.7% | 99.8% | (many diffs) |
| 12 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512834.3 | 99.7% | 99.8% | (many diffs) |
| 13 | human | 4026 | LPP | LIM domain containing prefe... | XM_017006377.1 | 99.7% | 99.8% | (many diffs) |
| 14 | human | 4026 | LPP | LIM domain containing prefe... | XM_017006378.1 | 99.7% | 99.8% | (many diffs) |
| 15 | human | 4026 | LPP | LIM domain containing prefe... | XM_017006379.2 | 99.7% | 99.8% | (many diffs) |
| 16 | human | 4026 | LPP | LIM domain containing prefe... | XM_017006380.2 | 99.7% | 99.8% | (many diffs) |
| 17 | human | 4026 | LPP | LIM domain containing prefe... | XM_024453519.1 | 99.7% | 99.8% | (many diffs) |
| 18 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512823.2 | 95.8% | 95.9% | (many diffs) |
| 19 | human | 4026 | LPP | LIM domain containing prefe... | NM_001167672.3 | 75.8% | 75.8% | (many diffs) |
| 20 | human | 4026 | LPP | LIM domain containing prefe... | XM_011512836.3 | 73.2% | 73.3% | (many diffs) |
| 21 | human | 4026 | LPP | LIM domain containing prefe... | XM_017006382.1 | 73.2% | 73.3% | (many diffs) |
| 22 | human | 4026 | LPP | LIM domain containing prefe... | XM_017006381.1 | 67.4% | 67.4% | (many diffs) |
| 23 | human | 4026 | LPP | LIM domain containing prefe... | XR_001740144.1 | 17.6% | (many diffs) | |
| 24 | mouse | 210126 | Lpp | LIM domain containing prefe... | XM_017316922.1 | 85.7% | 89.3% | (many diffs) |
| 25 | mouse | 210126 | Lpp | LIM domain containing prefe... | NM_001145952.1 | 85.6% | 89.2% | (many diffs) |
| 26 | mouse | 210126 | Lpp | LIM domain containing prefe... | NM_178665.5 | 85.6% | 89.2% | (many diffs) |
| 27 | mouse | 210126 | Lpp | LIM domain containing prefe... | XM_006521957.3 | 85.6% | 89.2% | (many diffs) |
| 28 | mouse | 210126 | Lpp | LIM domain containing prefe... | NM_001145954.1 | 67.8% | 68.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1905
- ORF length:
- 1836
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtctcaccca tcttggctgc cacccaaaag cactggtgag cccctcggcc 121 atgtgcctgc acggatggag accacccatt cctttgggaa ccccagcatt tcagtgtcta 181 cacaacagcc acccaaaaag tttgccccgg tagttgctcc aaaacctaag tacaacccat 241 acaaacaacc tggaggtgag ggtgattttc ttccaccccc acctccacct ctagatgatt 301 ccagtgccct tccatctatc tctggaaact ttcctcctcc accacctctt gatgaagagg 361 ctttcaaagt acaggggaat cccggaggca agacacttga ggagatgcgc tccagcctgg 421 acgctgagat tgactccttg accagcatct tggctgacct tgagtgcagc tccccctata 481 agcctcggcc tccacagagc tccactggtt caacagcctc tcctccagtt tcgaccccag 541 tcacaggaca caagagaatg gtcatcccga accaaccccc tctaacagca accaagaagt 601 ctacattgaa accacagcct gcaccccagg ctggacccat ccctgtggct ccaatcggaa 661 cactcaaacc ccagcctcag ccagtcccag cctcctacac cacggcctcc acttcttcaa 721 ggcctacctt taatgtgcag gtgaagtcag cccagcccag ccctcattat atggctgccc 781 cttcatcagg acaaatttat ggctcagggc cccagggcta taacactcag ccagttcctg 841 tctctgggca gtgtccacct ccttcaacac ggggaggcat ggattatgcc tacattccac 901 caccaggact tcagccggag cctgggtatg ggtatgcccc caaccaggga cgctattatg 961 aaggctacta tgcagcaggg ccaggctatg ggggcagaaa tgactctgat cctacctatg 1021 gtcaacaagg tcacccaaat acctggaaac gggaaccagg gtacactcct cctggagcag 1081 ggaaccagaa ccctcctggg atgtatccag tcactggtcc caagaagacc tatatcacag 1141 atcctgtttc agccccctgt gcgccaccat tgcagccaaa gggtggccat tcagggcaac 1201 tggggccttc gtcagttgcc ccttcattcc gcccagagga tgagcttgag cacctgacca 1261 aaaagatgct gtatgacatg gaaaatccac ctgctgacga atactttggc cgctgtgctc 1321 gctgtggaga aaacgtagtt ggggaaggta caggatgcac tgccatggat caggtcttcc 1381 acgtggattg ttttacctgc atcatctgca acaacaagct ccgagggcag ccattctatg 1441 ctgtggaaaa gaaagcatac tgcgagccct gctacattaa tactcttgag cagtgcaatg 1501 tgtgttccaa gcccatcatg gagcggattc tccgagccac cgggaaggcc tatcatcctc 1561 actgtttcac cTGCGTGATG TGCCACCGCA GCCTGGATGG GATCCCATTC ACTGTGGATG 1621 CTGGCGGGCT CATTCACTGC ATTGAGGACT TCCACAAGAA ATTTGCCCCG CGGTGTTCTG 1681 TGTGCAAGGA GCCTATTATG CCAGCCCCGG GCCAGGAGGA GACTGTCCGT ATTGTGGCTT 1741 TGGATCGAGA TTTCCATGTT CACTGCTACC GATGCGAGGA TTGCGGTGGT CTCCTGTCTG 1801 AAGGAGATAA CCAAGGCTGC TACCCCTTGG ATGGGCACAT CCTCTGCAAG ACCTGCAACT 1861 CTGCCCGCAT CAGGGTGTTG ACCGCCAAGG CGAGCACTGA CCTTTTGCCA ACTTTCTTGT 1921 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1981 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 2041 GAAAGGACGA TCTACGACGA TTGCGTAGTA CTTGACGCGT TAAGTCgaca atcaacctct 2101 ggattacaaa atttgtgaaa gatt