Construct: ORF TRCN0000475907

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012512.1_s317c1
Derived from:
ccsbBroadEn_08644
DNA Barcode:
GGATACGCATCCGCTTATTAGATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC2A9 (56606)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475907
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56606 SLC2A9 solute carrier family 2 mem... NM_020041.3 99.6% 99.4% (many diffs)
2 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513859.3 98.9% 98.1% (many diffs)
3 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513860.3 98.8% 98.3% (many diffs)
4 human 56606 SLC2A9 solute carrier family 2 mem... XM_006713968.4 93.7% 94.1% (many diffs)
5 human 56606 SLC2A9 solute carrier family 2 mem... NM_001001290.1 91.4% 90.9% (many diffs)
6 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008458.2 88.9% 86.2% (many diffs)
7 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513861.3 88.7% 86.4% (many diffs)
8 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008457.2 88.1% 87.5% (many diffs)
9 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454152.1 84.8% 77.8% (many diffs)
10 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513856.3 83.8% 78.3% (many diffs)
11 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454150.1 83.2% 77.5% (many diffs)
12 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513865.2 82.1% 79.8% (many diffs)
13 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454153.1 80.3% 79% (many diffs)
14 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513866.2 79.9% 78.7% (many diffs)
15 human 56606 SLC2A9 solute carrier family 2 mem... XR_925341.3 77.6% (many diffs)
16 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513857.1 76.8% 71% (many diffs)
17 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513858.1 76.8% 71% (many diffs)
18 human 56606 SLC2A9 solute carrier family 2 mem... XM_006713969.2 74.2% 71.4% (many diffs)
19 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008460.2 74.1% 74.6% (many diffs)
20 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513868.2 73.2% 68% (many diffs)
21 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454151.1 63.2% 57.9% (many diffs)
22 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513864.2 62% 56.6% (many diffs)
23 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513862.3 61.7% 56.7% (many diffs)
24 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008459.1 59.2% 53.8% (many diffs)
25 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513867.3 54% 48.7% (many diffs)
26 human 56606 SLC2A9 solute carrier family 2 mem... XR_001741291.1 44.1% (many diffs)
27 human 56606 SLC2A9 solute carrier family 2 mem... XR_001741290.1 30.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1689
ORF length:
1620
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcaaggaaa cnaaatagga attccaagga actgggccta gttcccctca
121cagatgacac cagccacgcc aggcctccag ggccagggag ggcactgctg gagtgtgacc
181acctgaggag tggggtgcca ggtggaagga gaagaaagga ctggtcctgc tcgctcctcg
241tggcctccct cgcgggcgcc ttcggctcct ccttcctcta cggctacaac ctgtcggtgg
301tgaatgcccc caccccgtac atcaaggcct tttacaatga gtcatgggaa agaaggcatg
361gacgtccaat agacccagac actctgactc tgctctggtc tgtgactgtg tccatattcg
421ccatcggtgg acttgtgggg acattaattg tgaagatgat tggaaaggtt cttgggagga
481agcacacttt gctggccaat aatgggtttg caatttctgc tgcattgctg atggcctgct
541cgctccaggc aggagccttt gaaatgctca tcgtgggacg cttcatcatg ggcatagatg
601gaggcgtcgc cctcagtgtg ctccccatgt acctcagtga gatctcaccc aaggagatcc
661gtggctctct ggggcaggtg actgccatct ttatctgcat tggcgtgttc actgggcagc
721ttctgggcct gcccgagctg ctgggaaagg agagtacctg gccatacctg tttggagtga
781ttgtggtccc tgccgttgtc cagctgctga gccttccctt tctcccggac agcccacgct
841acctgctctt ggagaagcac aacgaggcaa gagctgtgaa agccttccaa acgttcttgg
901gtaaagcaga cgtttcccaa gaggtagagg aggtcctggc tgagagccgc gtgcagagga
961gcatccgcct ggtgtccgtg ctggagctgc tgagagctcc ctacgtccgc tggcaggtgg
1021tcaccgtgat tgtcaccatg gcctgctacc agctctgtgg cctcaatgca atttggttct
1081ataccaacag catctttgga aaagctggga tccctctggc aaagatccca tacgtcacct
1141tgagtacagg gggcatcgag actttggctg ccgtcttctc tggtttggtc attgagcacc
1201tgggacggag acccctcctc attggtggct ttgggctcat gggcctcttc tttgggaccc
1261tcaccatcac gctgaccctg caggaccacg ccccctgggt cccctaccTG AGTATCGTGG
1321GCATTCTGGC CATCATCGCC TCTTTCTGCA GTGGGCCAGG TGGCATCCCG TTCATCTTGA
1381CTGGTGAGTT CTTCCAGCAA TCTCAGCGGC CGGCTGCCTT CATCATTGCA GGCACCGTCA
1441ACTGGCTCTC CAACTTTGCT GTTGGGCTCC TCTTCCCATT CATTCAGAAA AGTCTGGACA
1501CCTACTGTTT CCTAGTCTTT GCTACAATTT GTATCACAGG TGCTATCTAC CTGTATTTTG
1561TGCTGCCTGA GACCAAAAAC AGAACCTATG CAGAAATCAG CCAGGCATTT TCCAAAAGGA
1621ACAAAGCATA CCCACCAGAA GAGAAAATCG ACTCAGCTGT CACTGATGGT AAGATAAATG
1681GAAGGCCTTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1741CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1801TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGGATAC GCATCCGCTT ATTAGATAAC
1861GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)