Construct: ORF TRCN0000476000

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010830.1_s317c1
Derived from:
ccsbBroadEn_11753
DNA Barcode:
TGCCCTTGAGAACTCATACTTATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZMYND8 (23613)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476000
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281771.3 71.3% 65.6% (many diffs)
2 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281776.3 67.9% 62.6% (many diffs)
3 human 23613 ZMYND8 zinc finger MYND-type conta... NM_183048.4 66.6% 63.1% (many diffs)
4 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281782.3 66.5% 63.1% (many diffs)
5 human 23613 ZMYND8 zinc finger MYND-type conta... NM_012408.6 65.2% 61.8% (many diffs)
6 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281777.3 65% 61.6% (many diffs)
7 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281778.3 64.1% 61.7% (many diffs)
8 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281772.2 63.8% 61% (many diffs)
9 human 23613 ZMYND8 zinc finger MYND-type conta... NM_183047.4 63.6% 60.4% (many diffs)
10 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281783.3 62.8% 60.4% (many diffs)
11 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281781.3 62.5% 59% (many diffs)
12 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281774.3 62% 58.7% (many diffs)
13 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281775.3 61.4% 59.1% (many diffs)
14 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001363741.2 61.2% 58.8% (many diffs)
15 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001363714.1 60.8% 58.4% (many diffs)
16 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281784.3 60.2% 57.7% (many diffs)
17 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281773.2 59.8% 57.5% (many diffs)
18 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281780.3 45.3% 41.9% (many diffs)
19 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281779.3 44.3% 40.9% (many diffs)
20 human 23613 ZMYND8 zinc finger MYND-type conta... NM_001281769.1 15.7% 15.4% (many diffs)
21 mouse 228880 Zmynd8 zinc finger, MYND-type cont... NM_001252584.2 58.3% 57.1% (many diffs)
22 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499414.3 58.3% 57.1% (many diffs)
23 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239505.1 57.8% 56.6% (many diffs)
24 mouse 228880 Zmynd8 zinc finger, MYND-type cont... NM_001281926.1 56.7% 55.4% (many diffs)
25 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239504.1 56.6% 55.4% (many diffs)
26 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239503.1 56.5% 55.2% (many diffs)
27 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_017317954.1 55.5% 54.3% (many diffs)
28 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239502.1 55.3% 54.1% (many diffs)
29 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499401.3 55% 55.6% (many diffs)
30 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_017317943.1 55% 55.6% (many diffs)
31 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499400.3 54.8% 55.4% (many diffs)
32 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_017317924.1 54.7% 55.2% (many diffs)
33 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_017317920.1 54.5% 55% (many diffs)
34 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499390.3 54.4% 54.8% (many diffs)
35 mouse 228880 Zmynd8 zinc finger, MYND-type cont... NM_001252587.2 54.4% 57% (many diffs)
36 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499421.3 54.4% 57% (many diffs)
37 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499385.3 53.9% 54.5% (many diffs)
38 mouse 228880 Zmynd8 zinc finger, MYND-type cont... NM_027230.5 53.7% 54.3% (many diffs)
39 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499382.3 53.7% 54.3% (many diffs)
40 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499384.2 53.6% 54.2% (many diffs)
41 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499403.1 53.6% 52.9% (many diffs)
42 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499381.3 53.5% 54% (many diffs)
43 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499408.3 53.5% 54% (many diffs)
44 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239513.2 53.5% 54% (many diffs)
45 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239501.1 53.5% 53.9% (many diffs)
46 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499407.3 53.3% 53.8% (many diffs)
47 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499378.3 53.2% 53.5% (many diffs)
48 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499387.1 52.6% 51.9% (many diffs)
49 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_017317958.1 52.5% 51.9% (many diffs)
50 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499397.1 52.4% 52.9% (many diffs)
51 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239510.2 52.4% 52.9% (many diffs)
52 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239511.2 52.4% 52.9% (many diffs)
53 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239512.2 52.4% 52.9% (many diffs)
54 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_017317941.1 52.4% 52.9% (many diffs)
55 mouse 228880 Zmynd8 zinc finger, MYND-type cont... NM_001291158.1 52.3% 52.7% (many diffs)
56 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499391.2 52.3% 52.7% (many diffs)
57 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239506.2 52.3% 52.7% (many diffs)
58 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239507.1 52.3% 52.7% (many diffs)
59 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239508.2 52.3% 52.7% (many diffs)
60 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_011239509.2 52.3% 52.7% (many diffs)
61 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499418.3 44.5% 44.8% (many diffs)
62 mouse 228880 Zmynd8 zinc finger, MYND-type cont... XM_006499419.1 44.5% 44.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2433
ORF length:
2364
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcatccacag agcttggctg aagaggaaat aaaaacagaa caggaggtgg
121tagagggcat ggatatctct actcgctcca aagatcctgg ctctgcagag agaacagccc
181agaaaagaaa gttccccagc cctccacatt cttccaatgg ccactcgccg caggacacat
241caacaagccc cattaaaaag aaaaagaaac ctggcttact gaacagtaac aataaggagc
301aggatggacg gaatgatttc tactgctggg tttgtcaccg ggaaggccaa gtcctttgct
361gtgagctctg tccccgggtt tatcacgcta agtgtctgag actgacatcg gaaccagagg
421gggactggtt ttgtcctgaa tgtgagaaaa ttacagtagc agaatgcatc gagacccaga
481gtaaagccat gacaatgctc accattgaac agttatccta cctgctcaag tttgccattc
541agaaaatgaa acagccaggg acagatgcat tccagaagcc cgttccattg gaacagcacc
601ctgactatgc ggaatacatc ttccatccaa tggacctttg tacattggaa aagaatgcga
661aaaagaaaat gtatggctgc acagaagcct tcctggctga tgcaaagtgg attttgcaca
721actgcatcat ttataatggg ggaaatcaca aattgacgca aatagcgaaa gtagtcatca
781aaatctgtga acatgagatg aatgaaatcg aagtatgtcc agaatgttat ctagctgctt
841gccaaaaacg agataactgg ttttgtgagc cttgtagcaa tccacatcct ttggtctggg
901ccaaactgaa ggggtttcca ttctggcctg caaaagctct aagggataaa gacgggcagg
961tcgatgcccg attctttgga caacatgaca gggcctgggt tccaataaat aattgctacc
1021tcatgtctaa agaaattcat ttttctgtga aaaagactaa gagcatcttc aacagtgcca
1081tgcaagagat ggaggtttac gtggagaaca tccgcaggaa gtttggggtt tttaattact
1141ctccatttag gacaccctac acacacaaca gcaagtatca aatgctgctc gatcccacca
1201accccagcgc cggcactgcc aagatagaca agcaggagaa ggtcaagctc aactttgaca
1261tgacggcatc ccccaagatc ctgatgagca agcctgtgct gagtgggggc acaggccgcc
1321ggatttcctt gtcggatatg ccgcgctccc ccatgagcac aaactcttct gtgcacacgg
1381gctccgacgt ggagcaggat gctgagaaga aggccacgtc gagccacttc agtgcgagcg
1441aggagtccat ggacttcctg gataagagca cagcttcacc agcctccacc aagacgggac
1501aagcagggag tttatccggc agcccaaagc ccttctctcc tcaactgtca gctcctatca
1561cgacgaaaac ggacaaaacc tccaccaccg gcagcatcct gaatcttaac ctggatcgaa
1621gcaaagctga gatggatttg aaggagctga gcgagtcggt ccagcaacag tccacccctg
1681ttcctctcat ctctcccaag cgccagattc gtagcaggtt ccagctgaat cttgacaaga
1741ccatagagag ttgcaaagca caattaggca taaatgaaat ctcggaagat gtctatacgg
1801ccgtagagca cagcgattcg gaggattctg agaagtcaga tagtagcgat agtgagtata
1861tcagtgatga tgagcagaag tctaaggacg agccagaaga cacagaggac aaagaaggtt
1921gtcagatgga caaagagcca tctgctgtta aaaaaaagcc caagcctaca aacccagtgg
1981agattaaaga ggagctgaaa agcacgtcac cagccagcga gaaggcagac cctggagcag
2041tcaaggacaa ggccagccct gagcctgaga aggacttttc cgaaaaggca aaaccttcac
2101ctcaccccat aaaggataaa ctgaagggaa aagatgagac ggattcccca acagtccatt
2161tgggcctgga ctctgattca gagagcgaac ttgtcataga tttaggagta ataaatccag
2221ttGGAGCAGC AGTGATGAGA AGAGGGGATC GACACGTTCC GATCACAACA CCAGTACCAG
2281CACGAAGAGC CTCCTCCCGA AAGAGTCTCG GCTGGACACC TTCTGGGACT AGCAGTGAAT
2341CGGGACACAA ACCACCCACC CCATTGGGGG AAAAACCCAG ACGCCAGGAA AAGAAGAAAC
2401AACAAAGGCA GGAGAACAGC CACTTTCAGA CTTTGCCAAC TTTCTTGTAC AAAGTGGTTG
2461ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
2521GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATG
2581CCCTTGAGAA CTCATACTTA TCACGCGTTA AGTCgacaat caacctctgg attacaaaat
2641ttgtgaaaga tt

Download FASTA (ORF) (Full)