Construct: ORF TRCN0000476041

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009169.1_s317c1
Derived from:
ccsbBroadEn_08475
DNA Barcode:
ATCCAGATAGCGCTCACCACGGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HAUS2 (55142)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476041
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55142 HAUS2 HAUS augmin like complex su... NM_018097.3 99.8% 99.5% 694A>T
2 human 55142 HAUS2 HAUS augmin like complex su... NM_001130447.2 86.6% 86.3% 90_91ins93;601A>T
3 human 55142 HAUS2 HAUS augmin like complex su... NM_001323631.2 59.8% 59.5% 0_1ins282;412A>T
4 human 55142 HAUS2 HAUS augmin like complex su... NM_001323632.2 59.8% 59.5% 0_1ins282;412A>T
5 human 55142 HAUS2 HAUS augmin like complex su... XM_017022396.1 59.8% 59.5% 0_1ins282;412A>T
6 human 55142 HAUS2 HAUS augmin like complex su... XM_017022397.1 59.8% 59.5% 0_1ins282;412A>T
7 human 55142 HAUS2 HAUS augmin like complex su... NM_001323630.2 44.1% 43.8% 0_1ins393;301A>T
8 human 55142 HAUS2 HAUS augmin like complex su... NM_001323629.1 35.6% 38.9% 256_344del;372_373ins422
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
771
ORF length:
705
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttcgcatggc cgctgccaac ccgtgggacc cggcgtccgc gcctaacggc gctgggctag
121tgctaggcca cttcatagct tcggggatgg tcaatcagga gatgttaaac atgtctaaga
181aaacagtttc ttgttttgtg aacttcacca gactacagca gatcacaaat attcaagctg
241aaatctacca gaaaaacctg gaaattgaac tcctgaaact agaaaaagat acagcagatg
301ttgttcatcc tttctttttg gctcagaagt gtcatactct gcaaagcatg aataatcatt
361tggaagcagt gctgaaagag aagagatccc ttaggcaaag actgttgaaa cccatgtgcc
421aggaaaactt acctattgaa gctgtttatc acagatatat ggtacatttg ctggagttGG
481CTGTGACTTT CATTGAGAGA TTAGAAACCC ACCTTGAAAC AATTAGAAAT ATTCCTCATT
541TAGCTGCAAA TCTAAAGAAA ATGAACCAGG CTTTAGCAAA GATGGATATA TTGGTGACTG
601AGACAGAAGA ACTGGCAGAG AATATACTCA AGTGGCGTAA ACAACAAAAC GAAGTTTCGT
661CTTGTATCCC CAAAATATTA GCTGAAGAAA GTTATCTTTA TAAACATGAT ATTATAATGC
721CTCCTTTACC TTTTACTTCT AAAGTTCATG TCCAAACTTT TAATGCCAAG TACCCAACTT
781TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
841CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
901CTTGTGGAAA GGACGAATCC AGATAGCGCT CACCACGGAA ACGCGTTAAG TCgacaatca
961acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)