Transcript: Human NM_001323629.1

Homo sapiens HAUS augmin like complex subunit 2 (HAUS2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
HAUS2 (55142)
Length:
822
CDS:
61..435

Additional Resources:

NCBI RefSeq record:
NM_001323629.1
NBCI Gene record:
HAUS2 (55142)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001323629.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423305 ACTACAGCAGATCACAAATAT pLKO_005 207 CDS 100% 15.000 10.500 N HAUS2 n/a
2 TRCN0000147010 CTGGAAATTGAACTCCTGAAA pLKO.1 253 CDS 100% 4.950 3.465 N HAUS2 n/a
3 TRCN0000147428 GATACAGCAGATGTTGTTCAT pLKO.1 283 CDS 100% 4.950 3.465 N HAUS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001323629.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08475 pDONR223 100% 35.6% 38.9% None 256_344del;372_373ins422 n/a
2 ccsbBroad304_08475 pLX_304 0% 35.6% 38.9% V5 256_344del;372_373ins422 n/a
3 TRCN0000476041 ATCCAGATAGCGCTCACCACGGAA pLX_317 41.7% 35.6% 38.9% V5 256_344del;372_373ins422 n/a
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