Construct: ORF TRCN0000476078
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005994.1_s317c1
- Derived from:
- ccsbBroadEn_11569
- DNA Barcode:
- TCGCCGATCGCCCCGATAGCCCCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UTS2 (10911)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476078
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10911 | UTS2 | urotensin 2 | XM_017000118.1 | 82.4% | 77.2% | (many diffs) |
| 2 | human | 10911 | UTS2 | urotensin 2 | NM_006786.4 | 74.5% | 71.7% | (many diffs) |
| 3 | human | 10911 | UTS2 | urotensin 2 | XM_011540538.1 | 74.5% | 71.7% | (many diffs) |
| 4 | human | 10911 | UTS2 | urotensin 2 | NM_021995.2 | 67.6% | 64% | 1_112del;126_148del |
| 5 | human | 10911 | UTS2 | urotensin 2 | XM_011540537.2 | 67.6% | 64% | 1_112del;126_148del |
| 6 | human | 10911 | UTS2 | urotensin 2 | XM_017000117.1 | 63.7% | 57.1% | (many diffs) |
| 7 | human | 10911 | UTS2 | urotensin 2 | XM_017000116.1 | 58.5% | 51.6% | (many diffs) |
| 8 | human | 10911 | UTS2 | urotensin 2 | XM_017000119.1 | 42.3% | 36.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 351
- ORF length:
- 282
- Sequence:
-
1 tcttccattt CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG 61 TTGGCACCAT GATTTATTGC TCACCTCATG AAGACGCGCG CTTAACTCCG GAGGAGCTAG 121 AAAGAGCTTC CCTTCTACAG ATACTGCCAG AGATGCTGGG TGCAGAAAGA GGGGATATTC 181 TCAGGAAAGC AGACTCAAGT ACCAACATTT TTAACCCAAG AGGAAATTTG AGAAAGTTTC 241 AGGATTTCTC TGGACAAGAT CCTAACATTT TACTGAGTCA TCTTTTGGCC AGAATCTGGA 301 AACCATACAA GAAACGTGAG ACTCCTGATT GCTTCTGGAA ATACTGTGTC TTGCCAACTT 361 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 421 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 481 CTTGTGGAAA GGACGATCGC CGATCGCCCC GATAGCCCCC ACGCGTTAAG TCgacaatca 541 acctctggat tacaaaattt gtgaaagatt