Construct: ORF TRCN0000476194

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002393.1_s317c1
Derived from:
ccsbBroadEn_06964
DNA Barcode:
CCCAGCTCAACAACATTCATACTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
SLC9A2 (6549)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476194
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6549 SLC9A2 solute carrier family 9 mem... NM_003048.6 99.9% 69.5% 1696G>T
2 mouse 226999 Slc9a2 solute carrier family 9 (so... NM_001033289.2 84.7% 66.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1764
ORF length:
1695
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaaccactg ggcaactgga ggagcctgcg ggcgccactg cctccgatgc
121tgttgctgct gctcctgcag gtggcggggc ccgtgggcgc cctggcggag accttgctga
181acgcgccgag ggccatgggc accagttcca gcccgcctag ccctgcgagc gtggtggctc
241ccggaacgac gctgttcgag gagagccggc tgcctgtgtt tacgctggat tacccccacg
301tgcagatccc cttcgagatc accctttgga tcctgctggc ctccctggcc aagattggct
361tccatctgta tcacaagttg cccacaatag tgcctgagag ctgccttctt ataatggttg
421gacttctact aggtgggatt atttttggtg ttgatgagaa gtctccccct gcaatgaaga
481ctgatgtatt tttcttgtac ctcctcccac ccatcgtgct ggatgccggc tatttcatgc
541ccactcgccc attctttgag aacattggca cgattttctg gtatgctgtg gtagggacac
601tttggaattc cattggcatt ggggtgtctt tgtttggtat ctgccagatc gaagcattcg
661gcctcagcga catcactttg ctccagaacc tgctctttgg cagcttaatc tcagctgtcg
721atcctgtggc tgtgcttgct gtctttgaga acattcacgt caatgagcag ctctacatcc
781tggtctttgg agagtccctg ctgaatgatg cagtaacagt ggtcctgtac aacttgttca
841agtcgttttg ccagatgaaa accattgaga ccattgatgt gtttgcagga atcgccaact
901tctttgttgt gggaatcggt ggggtgctga ttggcatctt cttgggcttt atagcggcat
961ttactactcg attcacccat aatatccgag tgatcgagcc actgtttgtt ttcctgtaca
1021gttatttgtc ctacatcaca gctgaaatgt ttcacctctc aggcatcatg gcaatcactg
1081cttgtgcaat gactatgaat aagtacgtag aagaaaatgt atctcagaaa tcctacacga
1141ccatcaagta cttcatgaag atgctgagca gtgtcagcga aaccttgatc ttcatcttca
1201tgggtgtgtc taccgtgggc aagaaccacg agtggaactg ggccttcgtc tgcttcaccc
1261tggccttctg cctcatgtgg cgagccctgg gtgtttttgt cctgactcag gtcattaata
1321ggttccggac cattcccctg acctttaagg accagttcat cattgcctat ggaggacttc
1381gaggtgccat ctgttttgcg ttagtgtttc tccttcctgc tgctgtgttt cctcggaaaa
1441aattgtttat tacggctgcc attgttgtca tattctttac tgtcttcatt ctgggaataa
1501ctattcgacc actggtggag tttcttgatg tcaagaggtc caataagaaa caacaagctg
1561tcagtgaaga aatctattgt cggttgtttg atcatgtgaa gactggaatt gaagatgttt
1621gtggacattg gggtcacaac ttttggagag acaagtttaa gaagtttgat gataaatatc
1681tgcggaagct tttgattcgg gaaaaccaac caaagtcaag tattgtatct ttatataaaa
1741agcttgaaat aaaacatgcc atttagatgg cagagactgg gatgataagt actgtcccta
1801catttgcatc tctaaatgat tgtcgtgaag aaaaaataag gaaggtcacg tccagtgaaa
1861ctgatgaaat tcgagaactc ttatcaagaa atctctatca aatccgtcag cgaactttat
1921cctacaacag acacagtctg acagccgaca caagtgagag acaagccaag gagattctga
1981ttcgccggcg acacagtttg cgagaaagca ttaggaagga cagcagcttg aatcgagaac
2041acagggcttc cacttcaacc tcccgatatt tatccttacc taaaaatacg aagcttccag
2101aaaagctaca aaagaggagg actatttcta ttgcagatgg caatagcagc gactcagacg
2161cagatgccgg gaccaccgtg ctcaatttgc agcccagagc caggcgcttc ttgccagaac
2221agttctccaa gaaatccccc cagtcctata aaatggaatG GAAGAATGAG GTAGATGTTG
2281ATTCTGGCCG AGATATGCCC AGCACCCCCC CAACACCCCA CAGCAGAGAA AAGGGCACCC
2341AGACGTCAGG CTTACTACAG CAGCCCCTTC TCTCTAAAGA CCAGTCTGGC TCAGAGAGGG
2401AAGACAGTTT GACTGAAGGC ATCCCGCCCA AGCCGCCACC ACGGCTGGTC TGGAGGGCAT
2461CGGAACCTGG AAGCCGGAAA GCCCGATTTG GGAGTGAGAA GCCTTTGCCA ACTTTCTTGT
2521ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
2581AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
2641GAAAGGACGA CCCAGCTCAA CAACATTCAT ACTTACGCGT TAAGTCgaca atcaacctct
2701ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)