Transcript: Human NM_003048.6

Homo sapiens solute carrier family 9 member A2 (SLC9A2), mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
SLC9A2 (6549)
Length:
5601
CDS:
297..2735

Additional Resources:

NCBI RefSeq record:
NM_003048.6
NBCI Gene record:
SLC9A2 (6549)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003048.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000068788 CCGATATTTATCCTTACCTAA pLKO.1 2291 CDS 100% 4.950 6.930 N Slc9a2 n/a
2 TRCN0000424910 GCGACACAGTTTGCGAGAAAG pLKO_005 2216 CDS 100% 10.800 8.640 N SLC9A2 n/a
3 TRCN0000419888 TACTCGATTCACCCATAATAT pLKO_005 1193 CDS 100% 15.000 10.500 N SLC9A2 n/a
4 TRCN0000005742 CGAGAACTCTTATCAAGAAAT pLKO.1 2100 CDS 100% 13.200 9.240 N SLC9A2 n/a
5 TRCN0000436010 ACCAACCAAAGTCAAGTATTG pLKO_005 1933 CDS 100% 10.800 7.560 N SLC9A2 n/a
6 TRCN0000005739 CCACGGATAAATGAGGCAAAT pLKO.1 2871 3UTR 100% 10.800 7.560 N SLC9A2 n/a
7 TRCN0000005743 GCCTGTGTTTACGCTGGATTA pLKO.1 500 CDS 100% 10.800 7.560 N SLC9A2 n/a
8 TRCN0000005740 CGCCCATTCTTTGAGAACATT pLKO.1 774 CDS 100% 5.625 3.938 N SLC9A2 n/a
9 TRCN0000005741 CCCTGCTGAATGATGCAGTAA pLKO.1 1024 CDS 100% 4.950 3.465 N SLC9A2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003048.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06964 pDONR223 100% 99.9% 69.5% None 1696G>T n/a
2 ccsbBroad304_06964 pLX_304 0% 99.9% 69.5% V5 (not translated due to prior stop codon) 1696G>T n/a
3 TRCN0000476194 CCCAGCTCAACAACATTCATACTT pLX_317 10.4% 99.9% 69.5% V5 (not translated due to prior stop codon) 1696G>T n/a
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