Construct: ORF TRCN0000476205

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001378.1_s317c1
Derived from:
ccsbBroadEn_14167
DNA Barcode:
ACACAACCAGGCTCCGGTTGCAGG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TBC1D13 (54662)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476205
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54662 TBC1D13 TBC1 domain family member 13 NM_018201.5 99.8% 1.4% 6delA;1029C>T
2 human 54662 TBC1D13 TBC1 domain family member 13 XM_005252060.2 80.9% 1.8% 0_1ins227;801C>T
3 human 54662 TBC1D13 TBC1 domain family member 13 NM_001286772.1 68.5% 2.1% 6delA;543_544ins375;654C>T
4 mouse 70296 Tbc1d13 TBC1 domain family, member 13 NM_146252.3 90.4% 1.4% (many diffs)
5 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498320.2 73.1% 1.8% (many diffs)
6 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498321.2 73.1% 1.8% (many diffs)
7 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498322.2 73.1% 1.8% (many diffs)
8 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_017319254.1 73.1% 1.8% (many diffs)
9 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498323.3 51.5% 2.5% (many diffs)
10 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498324.2 49.8% 2.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
114
ORF length:
45
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtcagtctgc acaagagccg aattgcagat ttccaggatg tcctgaagga
121gccctcaatt gcattggaaa agctgcggga actcagcttt agtggcatcc cctgtgaggg
181cggactgcgg tgcctctgct ggaagattct cttgaactac cttcccttgg agagagcctc
241atggacctcc atcctggcca agcagaggga gctgtatgcc cagttcctga gggaaatgat
301catccagcct ggcattgcca aggccaacat gggtgtgtcc agggaggatg tgacttttga
361ggaccatcca ctcaacccca accctgacag ccggtggaac acgtacttca aggacaacga
421ggtgctgctg cagatcgaca aagatgtccg gaggttgtgc ccagacattt ccttcttcca
481gagggccact gactaccctt gcctcctcat cctggacccc cagaatgagt ttgaaaccct
541tcgtaagaga gtggaacaga caacactgaa atctcagacg gtggcccgga accggagtgg
601ggtcacaaat atgagctccc cacacaagaa ctctgtgcca tcatccctaa atgagtatga
661ggtgctgccc aatggctgtg aggcccactg ggaggtggtg gagcggatcc tgttcatcta
721cgccaagctc aaccctggca tcgcttatgt gcaaggcatg aatgaaatcg tggggcccct
781ctactacacc tttgccaccg accccaatag tgagtggaaa gagcacgccg aggcagacac
841ctttttctgc ttcaccaacc tcatggccga gatccgggac aactttatca agagcctgga
901tgactcgcag tgtggcatca ccTACAAGAT GGAGAAGGTT TACTCCACCT TGAAAGATAA
961GGATGTGGAG CTCTACCTGA AACTGCAAGA GCAGAACATC AAGCCTCAGT TCTTTGCCTT
1021CCGCTGGCTG ACACTGCTGC TGTCCCAGGA GTTCTTGCTG CCTGACGTCA TCCGCATCTG
1081GGACTCCCTC TTCGCTGATG ACAACCGCTT TGACTTCCTC CTCCTCGTCT GCTGCGCCAT
1141GCTCATGCTG ATCCGGGAGC AGTTGCTGGA AGGGGACTTC ACTGTGAATA TGCGGCTGCT
1201GCAGGACTAC CCCATCACAG ATGTCTGCCA GATCCTGCAG AAAGCCAAGG AGCTCCAAGA
1261CTCAAAGTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC
1321TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT
1381TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAACACAAC CAGGCTCCGG TTGCAGGACG
1441CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)