Construct: ORF TRCN0000476265
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001951.1_s317c1
- Derived from:
- ccsbBroadEn_13730
- DNA Barcode:
- TCACAAGTTGTGGGCATTGCGCAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC37A4P (55073)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476265
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524848.3 | 3.8% | 2.4% | (many diffs) |
| 2 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524846.3 | 3.8% | 2.4% | (many diffs) |
| 3 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524844.3 | 3.7% | 2.4% | (many diffs) |
| 4 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524843.3 | 3.7% | 2.4% | (many diffs) |
| 5 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524842.3 | 3.7% | 2.3% | (many diffs) |
| 6 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524841.3 | 3.6% | 2.3% | (many diffs) |
| 7 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | NM_001006607.2 | 3.6% | 2.3% | (many diffs) |
| 8 | human | 9884 | LRRC37A | leucine rich repeat contain... | NM_014834.4 | 3.6% | 2.2% | (many diffs) |
| 9 | human | 387646 | LRRC37A6P | leucine rich repeat contain... | NR_003525.2 | 2.8% | (many diffs) | |
| 10 | human | 55073 | LRRC37A4P | leucine rich repeat contain... | NR_002940.2 | 2.6% | 1_4562del;4633_4730del;4856_7238del | |
| 11 | human | 55073 | LRRC37A4P | leucine rich repeat contain... | XR_002958879.1 | 2.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 288
- ORF length:
- 195
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGAAGAA GGATTCTCAA GGGGCATTTT 121 CAGGTTTCTG CCACGGAGGA GATGCTCTTC ACGAAGGGAG AGTCAGACGG CCGCTCTGGC 181 TTAAAGATAT GTACAAACCT CTCAGTGCCA CAAGAGTAAA TAATCACGCA TGGAAGCTGC 241 ACAAGAAGTC ATCTAATGAG GACGAGATCC TCAACAGGGA CCCTGGGTTG CCAACTTTCT 301 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 361 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 421 GTGGAAAGGA CGATCACAAG TTGTGGGCAT TGCGCACACG CGTTAAGTCg acaatcaacc 481 tctggattac aaaatttgtg aaagatt