Construct: ORF TRCN0000476315
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018211.1_s317c1
- Derived from:
- ccsbBroadEn_10633
- DNA Barcode:
- ATCATATGGCTCCTAAATCAGCGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01561 (404216)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476315
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 404216 | LINC01561 | long intergenic non-protein... | NR_103717.1 | 17.5% | 1_362del;747_2186del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 453
- ORF length:
- 384
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcctggaga gtcccagggg tgaggccagc aagtactttc ttcccccagg 121 tgctcagagc atcctctgag ttgccaaaca gacTCCCAGA GGGGTCAACT GTGGGCCCTA 181 AACCAGACAG CAGCTGGGAA GCAGGCTCTC AGGGGAACTG GGGTCTCACC AGCTCAGGAG 241 CAGGCCAGGA CTCCTCAGCA CAGAAGCTGG GAATCTTGAG TGTCCAGATC AGCCTGAAAA 301 TCTGGACTTG GGAAAAGCCA TCTGGCTGGG GCCACCTGCA TGCCGCTGTG ACTGGGGCAT 361 CCTGCTGCTC TCCTCTCTCA CAAGGTGGTG CCATCTGCCT TGTCACTGCT CCTCAGGACA 421 AGCCTGACTG CTCTCCCTGC ACCTCTGGCC ATTTGCCAAC TTTCTTGTAC AAAGTGGTTG 481 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 541 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAT 601 CATATGGCTC CTAAATCAGC GCACGCGTTA AGTCgacaat caacctctgg attacaaaat 661 ttgtgaaaga tt