Construct: ORF TRCN0000476430

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001480.1_s317c1
Derived from:
ccsbBroadEn_12631
DNA Barcode:
ACACAAACTGAACTCCCTACATGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AGBL2 (79841)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476430
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520376.3 37.1% 37% 1_1443del;1605G>T;1642T>C
2 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520377.2 37.1% 37% 1_1443del;1605G>T;1642T>C
3 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520378.2 37.1% 37% 1_1443del;1605G>T;1642T>C
4 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520379.2 37.1% 37% 1_1443del;1605G>T;1642T>C
5 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520375.3 34.7% 34.6% 1_1602del;1764G>T;1801T>C
6 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_017018332.1 34.4% 34.3% 1_1623del;1785G>T;1822T>C
7 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520374.3 34.3% 34.2% 1_1629del;1791G>T;1828T>C
8 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_006718327.4 33.6% 33.5% 1_1683del;1845G>T;1882T>C
9 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_005253138.5 32.9% 32.8% 1_1737del;1899G>T;1936T>C
10 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520372.3 32.9% 32.8% 1_1737del;1899G>T;1936T>C
11 human 79841 AGBL2 ATP/GTP binding protein like 2 NM_024783.4 31.5% 31.4% 1_1851del;2013G>T;2050T>C
12 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520373.3 30.5% 29.3% (many diffs)
13 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_006718328.4 29.3% 29.3% (many diffs)
14 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_005253139.5 28.7% 28.7% (many diffs)
15 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_017018331.2 27.5% 26.6% (many diffs)
16 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_005253140.5 23.8% 23.8% (many diffs)
17 human 79841 AGBL2 ATP/GTP binding protein like 2 XR_242824.5 21.1% (many diffs)
18 human 79841 AGBL2 ATP/GTP binding protein like 2 XM_011520381.3 20.5% 20.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
921
ORF length:
855
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg gcggatggga atcctaaaca gctacaccat ggagtctacc tttggcgggt
121ccaccctggg taataaaaga gacacccact ttaccatcga agatctgaag tccttaggtt
181atcatgtctg tgacaccctt ctggactttt gtgatcctga ccaaattaag ttcactcagt
241gtctagcaga gcttaaggag cttctacgac aggaaatcca caagaaattc catgaacttg
301gacaagatgt agatttagaa ggaagttgga gtgacatctc tttgtctgac attgaatcca
361gcaccagtgg ctctgacagt tctctctcag atggtcttcc tgttcaccta gcaaacatag
421cagatgagct gactcagaaa aagaagatgt ttaagaagaa aaaaaagaag tcacttcaga
481ctaggaaaca gcgaaatgag cagtatcaga aaaaaaattt gatgcagaag ttaaagttaa
541cagaagatac cTCAGAAAAG GCAGGATTTG CTTCTACTCT GCAAAAGCAG CCAACCTTTT
601TCAAAAACTC AGAGAATTCC AGTTTTTTAC CAATGAAAAA TGAAAACCCA AGGTTAAATG
661AGACAAATTT AAATAGAAGA GACAAAGACA CCCCCCTGGA CCCATCAATG GCCACCCTGA
721TTCTGCCTAA GAATAAAGGG AGAATGCAGA ATAAGAAGCC AGGCTTTACA GTATCATGCT
781CTCCAAAGAG AACCATAAAC TCCAGCCAAG AGCCAGCTCC AGGTATGAAG CCAAACTGGC
841CTAGGAGCAG ATATCCTGCC ACAAAGAGAG GCTGTGCTGC CATGGCGGCA TACCCATCCT
901TGCACATATA CACATACCCG GACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
961CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1021AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAACAC AAACTGAACT
1081CCCTACATGC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)