Construct: ORF ccsbBroadEn_12631
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001480.1_s300c1, BRDN0000395373
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AGBL2 (79841)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520376.3 | 37.1% | 37% | 1_1443del;1605G>T;1642T>C |
| 2 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520377.2 | 37.1% | 37% | 1_1443del;1605G>T;1642T>C |
| 3 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520378.2 | 37.1% | 37% | 1_1443del;1605G>T;1642T>C |
| 4 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520379.2 | 37.1% | 37% | 1_1443del;1605G>T;1642T>C |
| 5 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520375.3 | 34.7% | 34.6% | 1_1602del;1764G>T;1801T>C |
| 6 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_017018332.1 | 34.4% | 34.3% | 1_1623del;1785G>T;1822T>C |
| 7 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520374.3 | 34.3% | 34.2% | 1_1629del;1791G>T;1828T>C |
| 8 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_006718327.4 | 33.6% | 33.5% | 1_1683del;1845G>T;1882T>C |
| 9 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_005253138.5 | 32.9% | 32.8% | 1_1737del;1899G>T;1936T>C |
| 10 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520372.3 | 32.9% | 32.8% | 1_1737del;1899G>T;1936T>C |
| 11 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | NM_024783.4 | 31.5% | 31.4% | 1_1851del;2013G>T;2050T>C |
| 12 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520373.3 | 30.5% | 29.3% | (many diffs) |
| 13 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_006718328.4 | 29.3% | 29.3% | (many diffs) |
| 14 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_005253139.5 | 28.7% | 28.7% | (many diffs) |
| 15 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_017018331.2 | 27.5% | 26.6% | (many diffs) |
| 16 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_005253140.5 | 23.8% | 23.8% | (many diffs) |
| 17 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XR_242824.5 | 21.1% | (many diffs) | |
| 18 | human | 79841 | AGBL2 | ATP/GTP binding protein like 2 | XM_011520381.3 | 20.5% | 20.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 921
- ORF length:
- 855
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG GCGGATGGGA ATCCTAAACA GCTACACCAT GGAGTCTACC TTTGGCGGGT 121 CCACCCTGGG TAATAAAAGA GACACCCACT TTACCATCGA AGATCTGAAG TCCTTAGGTT 181 ATCATGTCTG TGACACCCTT CTGGACTTTT GTGATCCTGA CCAAATTAAG TTCACTCAGT 241 GTCTAGCAGA GCTTAAGGAG CTTCTACGAC AGGAAATCCA CAAGAAATTC CATGAACTTG 301 GACAAGATGT AGATTTAGAA GGAAGTTGGA GTGACATCTC TTTGTCTGAC ATTGAATCCA 361 GCACCAGTGG CTCTGACAGT TCTCTCTCAG ATGGTCTTCC TGTTCACCTA GCAAACATAG 421 CAGATGAGCT GACTCAGAAA AAGAAGATGT TTAAGAAGAA AAAAAAGAAG TCACTTCAGA 481 CTAGGAAACA GCGAAATGAG CAGTATCAGA AAAAAAATTT GATGCAGAAG TTAAAGTTAA 541 CAGAAGATAC CTCAGAAAAG GCAGGATTTG CTTCTACTCT GCAAAAGCAG CCAACCTTTT 601 TCAAAAACTC AGAGAATTCC AGTTTTTTAC CAATGAAAAA TGAAAACCCA AGGTTAAATG 661 AGACAAATTT AAATAGAAGA GACAAAGACA CCCCCCTGGA CCCATCAATG GCCACCCTGA 721 TTCTGCCTAA GAATAAAGGG AGAATGCAGA ATAAGAAGCC AGGCTTTACA GTATCATGCT 781 CTCCAAAGAG AACCATAAAC TCCAGCCAAG AGCCAGCTCC AGGTATGAAG CCAAACTGGC 841 CTAGGAGCAG ATATCCTGCC ACAAAGAGAG GCTGTGCTGC CATGGCGGCA TACCCATCCT 901 TGCACATATA CACATACCCG TCCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 961 attgcttatc aatttgttgc aacgaac