Construct: ORF TRCN0000476435

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013723.1_s317c1
Derived from:
ccsbBroadEn_13280
DNA Barcode:
TAGATTTAGTGCACGTTGACTTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPNE9 (151835)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476435
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 151835 CPNE9 copine family member 9 NM_001308388.2 100% 100%
2 human 151835 CPNE9 copine family member 9 NM_153635.3 90.3% 89.3% (many diffs)
3 human 151835 CPNE9 copine family member 9 XM_011533386.2 74.1% 71.9% (many diffs)
4 human 151835 CPNE9 copine family member 9 XR_001740032.1 70.3% (many diffs)
5 human 151835 CPNE9 copine family member 9 XM_011533388.2 58.8% 57.2% (many diffs)
6 human 151835 CPNE9 copine family member 9 XM_011533389.2 49.6% 47.7% (many diffs)
7 human 151835 CPNE9 copine family member 9 XM_017005747.1 40.6% 35.3% (many diffs)
8 human 151835 CPNE9 copine family member 9 XR_002959492.1 37.3% (many diffs)
9 mouse 211232 Cpne9 copine family member IX NM_170673.3 83.1% 88.4% (many diffs)
10 mouse 211232 Cpne9 copine family member IX XM_006505851.3 79.8% 84.6% (many diffs)
11 mouse 211232 Cpne9 copine family member IX XM_011241277.2 62.4% 66.3% (many diffs)
12 mouse 211232 Cpne9 copine family member IX XM_006505852.3 58.1% 61.8% (many diffs)
13 mouse 211232 Cpne9 copine family member IX XM_017321489.1 58.1% 61.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1578
ORF length:
1509
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtctctcggc ggagcctccg agcgcagcgt cccggccacc aagattgaaa
121ttaccgtgtc ctgccggaac ctgctagacc ttgatacctt ctccaagtcc gaccccatgg
181tggtgcttta cacgcagagc cgggccagcc aggagtggcg ggagttcgga cggaccgagg
241tgattgataa cacgctgaac ccagacttcg tgcgcaaatt cgtcctcgac tatttctttg
301aggaaaagca aaatctgcgc ttcgatgtgt acaacgtgga ctccaaaacc aacatctcca
361aaccgaagga tttcctggga caagcgttcc tggccctggg agaggtgatt ggaggccagg
421gcagccgagt agagcgaacc ctcacgggtg taccaggcaa gaagtgtggg accatattgc
481tgactgcaga agagcttagc aattgtcggg acattgccac catgcagctg tgtgcaaaca
541agctggacaa gaaggacttc tttgggaaat cagacccctt ccttgtgttc tacaggagca
601atgaggatgg cacgttcacc atctgccaca agacagaggt tgtgaaaaac acgctgaatc
661ctgtgtggca gcccttcagc atccctgtgc gggctctgtg caatggagac tatgacagaa
721cggtgaagat tgatgtgtac gactgggacc gggatggaag ccacgatttc attggtgagt
781tcaccaccag ctaccgggag ctgagcaagg cccagaacca gttcacagta tatgaggttc
841ttaaccctcg gaagaaatgt aagaagaaga aatatgtcaa ctcaggaact gtgacgctgc
901tctccttctc tgtggactct gaattcactt ttgttgatta catcaaggga gggacacagc
961tgaacttcac agtagccatt gacttcacgg cttccaatgg gaatcctctg cagcctacct
1021ccctgcacta catgagtccc taccagctca gcgcctatgc catggccctc aaggcagtgg
1081gagagatcat ccaggactat gacagtgata agctcttccc agcttatggc tttggggcca
1141agctgccccc agagggacgg atctcccacc agttccccct GAACAACAAT GATGAGGACC
1201CCAACTGTGC GGGCATCGAG GGTGTGCTGG AGAGCTATTT CCAGAGCCTG CGCACAGTGC
1261AGCTCTATGG GCCCACCTAC TTTGCTCCTG TCATCAACCA AGTGGCCAGG GCTGCAGCCA
1321AGATCTCTGA TGGCTCCCAG TACTATGTTC TGCTCATCAT CACTGATGGG GTCATCTCTG
1381ACATGACGCA GACCAAGGAG GCCATCGTCA GCGCCTCCTC ATTGCCCATG TCTATCATTA
1441TCGTCGGTGT AGGACCAGCC ATGTTTGAGG CAATGGAAGA GTTGGACGGT GATGATGTGC
1501GCGTGTCCTC TAGGGGACGC TACGCAGAGC GGGACATCGT TCAGGAAGGT TGCTGCAGCC
1561TTGGCACATC CGTGGTGTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1621TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1681GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATAGATTT AGTGCACGTT
1741GACTTTCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)