Transcript: Human XR_002959492.1

PREDICTED: Homo sapiens copine family member 9 (CPNE9), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CPNE9 (151835)
Length:
3952
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002959492.1
NBCI Gene record:
CPNE9 (151835)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002959492.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000165706 CATCGTTCAGTTCGTCCCATT pLKO.1 3543 3UTR 100% 4.050 5.670 N CPNE9 n/a
2 TRCN0000162719 CAAGAAGTGTGGGACCATATT pLKO.1 737 3UTR 100% 13.200 9.240 N CPNE9 n/a
3 TRCN0000160579 CACAGTATATGAGGTTCTTAA pLKO.1 1436 3UTR 100% 13.200 9.240 N CPNE9 n/a
4 TRCN0000162231 CTGAACTTCACAGTAGCCATT pLKO.1 2019 3UTR 100% 4.050 2.835 N CPNE9 n/a
5 TRCN0000111612 CCTTGTGTTCTACAGGAGCAA pLKO.1 860 3UTR 100% 2.640 1.848 N Cpne9 n/a
6 TRCN0000166017 GCTGAACTTCACAGTAGCCAT pLKO.1 2018 3UTR 100% 2.640 1.848 N CPNE9 n/a
7 TRCN0000162546 CCAGAACCAGTTCACAGTATA pLKO.1 1424 3UTR 100% 13.200 7.920 N CPNE9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002959492.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13280 pDONR223 100% 37.3% None (many diffs) n/a
2 ccsbBroad304_13280 pLX_304 0% 37.3% V5 (many diffs) n/a
3 TRCN0000476435 TAGATTTAGTGCACGTTGACTTTC pLX_317 26.6% 37.3% V5 (many diffs) n/a
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