Construct: ORF TRCN0000476481

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000851.1_s317c1
Derived from:
ccsbBroadEn_10376
DNA Barcode:
CTTCGTTGAAACCCAACGGCGATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT14P1 (401135)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476481
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 255928 SYT14 synaptotagmin 14 XM_017000935.2 42.8% 39.2% (many diffs)
2 human 255928 SYT14 synaptotagmin 14 NM_001256006.1 28% 25.6% (many diffs)
3 human 255928 SYT14 synaptotagmin 14 XM_017000932.2 27% 24.7% (many diffs)
4 human 255928 SYT14 synaptotagmin 14 XM_017000933.2 27% 24.7% (many diffs)
5 human 255928 SYT14 synaptotagmin 14 XM_017000934.2 27% 24.7% (many diffs)
6 human 255928 SYT14 synaptotagmin 14 NM_153262.4 26.1% 23.9% (many diffs)
7 human 255928 SYT14 synaptotagmin 14 NM_001146262.3 25.2% 23.1% (many diffs)
8 human 255928 SYT14 synaptotagmin 14 NM_001146264.3 24.1% 22.1% (many diffs)
9 human 255928 SYT14 synaptotagmin 14 NM_001146261.2 23.4% 21.4% (many diffs)
10 human 401135 SYT14P1 synaptotagmin 14 pseudogene 1 NR_027094.1 17.8% 1_285del;754_2628del
11 human 255928 SYT14 synaptotagmin 14 XM_017000931.1 17.1% 15.7% (many diffs)
12 human 255928 SYT14 synaptotagmin 14 XM_006711262.3 16.7% 15.3% (many diffs)
13 human 255928 SYT14 synaptotagmin 14 NR_027459.3 3.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
537
ORF length:
468
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtcttgtagt gaaagtacat ccgcatgtca gtctctcgaa gacgggtcag
121ttccagaaat tctcattagc cTGCTTTATA ATGCCACAAA TGGGAGACTA TCAGCAGAAG
181TGATAAAAGG CAGCCACTTA AAAAATTGGG CAGCAAACAG ACCACCCAAT ACATATGTTA
241AGTTAACTCT ACGGAAATCC ACGGATCAAG AGATGTCCAA ATGCAAGATA TCCATCCGCA
301GAGGGCGGCC AAATCCAGTA TACAAGGAAA CTTTTGTTTT CAAAGTGACC CTATTTCAGC
361TTTCTCATGT GACACTCATG CTGTCTGTGT ATAACAAAAG CAGCATGAGA AGAAAGATGA
421TAGGCTGGAT TTATTTAGGT CTCAACAGCT CTGGAGAAGA ACTCAATCAC TGGACTGAAA
481TGAAAGAGTC AAAAGGACGG CAAGTACGTA GATGGCAGGC GTTGCTAGAG TCACGATTGC
541CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
601TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
661ATATATCTTG TGGAAAGGAC GACTTCGTTG AAACCCAACG GCGATAACGC GTTAAGTCga
721caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)