Construct: ORF TRCN0000476499

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005129.1_s317c1
Derived from:
ccsbBroadEn_08674
DNA Barcode:
ATAGAACACAATGGGTCCCTTACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SDR39U1 (56948)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476499
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56948 SDR39U1 short chain dehydrogenase/r... NM_020195.2 99.5% 98.9% 234_235delAAinsTC;696G>C;809A>G
2 human 56948 SDR39U1 short chain dehydrogenase/r... XM_011536975.2 92.2% 91.7% (many diffs)
3 human 56948 SDR39U1 short chain dehydrogenase/r... NM_001290292.1 71.7% 62.3% (many diffs)
4 human 56948 SDR39U1 short chain dehydrogenase/r... NM_001308075.1 71.7% 62.3% (many diffs)
5 human 56948 SDR39U1 short chain dehydrogenase/r... NM_001290293.2 62.6% 62.1% (many diffs)
6 mouse 654795 Sdr39u1 short chain dehydrogenase/r... NM_001082975.1 85.4% 84.6% (many diffs)
7 mouse 654795 Sdr39u1 short chain dehydrogenase/r... XM_006519365.3 70.9% 69.3% (many diffs)
8 mouse 654795 Sdr39u1 short chain dehydrogenase/r... XM_006519366.2 55.5% 54.7% (many diffs)
9 mouse 654795 Sdr39u1 short chain dehydrogenase/r... XM_011245133.2 55.5% 54.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
945
ORF length:
879
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcg tgtgcttgtg ggtggcggga caggcttcat tgggacagcc ctaacccagc
121tgctgaatgc cagaggccac gaagtgacgt tggtctcccg aaagcccggg cccggccgga
181tcacgtggga tgagctcgct gcatcggggc tgccgagctg cgatgccgcc gtcaacctgg
241ccggagagaa catcctcaac cctctccgaa gatggaatga aaccttccaa aaagaggttc
301tcggcagccg cctagagacc acccaattgc tggctaaagc catcaccaaa gccccacaac
361cccccaaggc ctgggtctta gtcacaggtg tagcttacta ccagcccagt ctgactgcgg
421agtatgatga agacagccca ggaggggact ttgacttttt ctccaacctc gtaaccaaat
481gggaagctgc agccaggctt cctggagatt ctacacgcca ggtggtggtg cgctcagggg
541ttgtgctggg ccgtgggggt ggtgccatgg gccacatgct gctgcccttt cgcctgggcc
601tggggggccc catcggctca ggccaccaat tcttcccctG GATACACATC GGGGACCTGG
661CAGGAATCCT GACCCATGCC CTTGAAGCAA ACCACGTGCA CGGGGTCCTG AATGGAGTGG
721CTCCATCCTC CGCCACTAAT GCTGAGTTTG CCCAGACCTT CGGTGCTGCC CTGGGCCGCC
781GAGCCTTCAT CCCTCTCCCC AGCGCTGTGG TGCAAGCTGT CTTTGGGCGA CAGCGTGCCA
841TCATGCTGCT GGAGGGCCAG AAGGTGATCC CACGGCGAAC ACTGGCCACT GGCTACCAGT
901ATTCCTTCCC AGAGCTAGGG GCTGCCTTAA AGGAAATTGT AGCCTACCCA ACTTTCTTGT
961ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1021AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1081GAAAGGACGA ATAGAACACA ATGGGTCCCT TACCACGCGT TAAGTCgaca atcaacctct
1141ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)