Construct: ORF TRCN0000476561

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015839.1_s317c1
Derived from:
ccsbBroadEn_07129
DNA Barcode:
AAAGATGGGATGGCTGCGAACTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VIPR1 (7433)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476561
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7433 VIPR1 vasoactive intestinal pepti... NM_004624.4 99.8% 99.7% 444T>C;1022G>T
2 human 7433 VIPR1 vasoactive intestinal pepti... XM_005265437.2 99.6% 99.5% 397_398insAGC;441T>C;1019G>T
3 human 7433 VIPR1 vasoactive intestinal pepti... NM_001251885.1 93.9% 93.2% (many diffs)
4 human 7433 VIPR1 vasoactive intestinal pepti... NM_001251882.1 90.8% 90.8% 0_1ins123;321T>C;899G>T
5 human 7433 VIPR1 vasoactive intestinal pepti... XM_005265438.3 90.8% 90.8% 0_1ins123;321T>C;899G>T
6 human 7433 VIPR1 vasoactive intestinal pepti... XM_011534079.1 90.8% 90.8% 0_1ins123;321T>C;899G>T
7 human 7433 VIPR1 vasoactive intestinal pepti... XM_005265439.2 89.5% 86.6% (many diffs)
8 human 7433 VIPR1 vasoactive intestinal pepti... NM_001251884.1 89.3% 86.4% (many diffs)
9 human 7433 VIPR1 vasoactive intestinal pepti... XM_011534080.2 75.6% 71.9% (many diffs)
10 human 7433 VIPR1 vasoactive intestinal pepti... NM_001251883.1 53.4% 39.6% (many diffs)
11 human 7433 VIPR1 vasoactive intestinal pepti... XR_001740254.1 48.6% (many diffs)
12 human 7433 VIPR1 vasoactive intestinal pepti... XR_940500.2 48.2% (many diffs)
13 human 7433 VIPR1 vasoactive intestinal pepti... XR_001740255.1 39.6% (many diffs)
14 mouse 22354 Vipr1 vasoactive intestinal pepti... XM_006512068.3 85.8% 84.4% (many diffs)
15 mouse 22354 Vipr1 vasoactive intestinal pepti... NM_011703.4 85.7% 84.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1437
ORF length:
1371
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcg cccgccaagt ccgctgcccg cccgctggct atgcgtgctg gcaggcgccc
121tcgcctgggc ccttgggccg gcgggcggcc aggcggccag gctgcaggag gagtgtgact
181atgtgcagat gatcgaggtg cagcacaagc agtgcctgga ggaggcccag ctggagaatg
241agacaatagg ctgcagcaag atgtgggaca acctcacctg ctggccagcc acccctcggg
301gccaggtagt tgtcttggcc tgtcccctca tcttcaagct cttctcctcc attcaaggcc
361gcaatgtaag ccgcagctgc accgacgaag gctggacgca cctggagcct ggcccgtacc
421ccattgcctg tggtttggat gacaaggcag cgagtttgga tgagcagcag accatgttct
481acggttctgt gaagaccggc tacaccatcg gctacggcct gtccctcgcc acccttctgg
541tcgccacagc tatcctgagc ctgttcagga agctccactg cacgcggaac tacatccaca
601tgcacctctt catatccttc atcctgaggg ctgccgctgt cttcatcaaa gacttggccc
661tcttcgacag cggggagtcg gaccagtgct ccgagggctc ggtgggctgt aaggcagcca
721tggtcttttt ccaatattgt gtcatggcta acttcttctg gctgctggtg gagggcctct
781acctgtacac cctgcttgcc gtctccttct tctctgagcg gaagtacttc tgggggtaca
841tactcatcgg ctggggggta cccagcacat tcaccatggt gtggaccatc gccaggatcc
901attttgagga ttatgggtgc tgggacacca tcaactcctc actgtggtgg atcataaagg
961gccccatcct cacctccatc ttggtaaact tcatcctgtt tatttgcatc atccgaatcc
1021tgcttcagaa actgcggccc ccagatatca ggaagagtga cagcagtcca tactcaaggc
1081tagccatgtc cacactcctg ctgatccccc tgtttggagt acactacatc atgttcgcct
1141tctttccgga caattttaag cctgaagtga agatggtctt tgagctcgtc gtggggtctt
1201tccagggttt tgtggtggct aTCCTCTACT GCTTCCTCAA TGGTGAGGTG CAGGCGGAGC
1261TGAGGCGGAA GTGGCGGCGC TGGCACCTGC AGGGCGTCCT GGGCTGGAAC CCCAAATACC
1321GGCACCCGTC GGGAGGCAGC AACGGCGCCA CGTGCAGCAC GCAGGTTTCC ATGCTGACCC
1381GCGTCAGCCC AGGTGCCCGC CGCTCCTCCA GCTTCCAAGC CGAAGTCTCC CTGGTCTGCC
1441CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1501TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1561ATATATCTTG TGGAAAGGAC GAAAAGATGG GATGGCTGCG AACTCCACGC GTTAAGTCga
1621caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)