Transcript: Human XM_005265438.3

PREDICTED: Homo sapiens vasoactive intestinal peptide receptor 1 (VIPR1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
VIPR1 (7433)
Length:
3319
CDS:
777..2027

Additional Resources:

NCBI RefSeq record:
XM_005265438.3
NBCI Gene record:
VIPR1 (7433)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005265438.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000358222 TCGCCTTCTTTCCGGACAATT pLKO_005 1723 CDS 100% 13.200 18.480 N VIPR1 n/a
2 TRCN0000014213 GCTGTCAAGTTCCTTTGGGTT pLKO.1 2490 3UTR 100% 2.640 2.112 N VIPR1 n/a
3 TRCN0000014217 CGCCTTCTTTCCGGACAATTT pLKO.1 1724 CDS 100% 13.200 9.240 N VIPR1 n/a
4 TRCN0000014216 CCTCACCTCCATCTTGGTAAA pLKO.1 1556 CDS 100% 10.800 7.560 N VIPR1 n/a
5 TRCN0000358223 GACCATCGCCAGGATCCATTT pLKO_005 1472 CDS 100% 10.800 7.560 N VIPR1 n/a
6 TRCN0000014214 CCTGAAGTGAAGATGGTCTTT pLKO.1 1749 CDS 100% 4.950 3.465 N VIPR1 n/a
7 TRCN0000014215 GCACCTCTTCATATCCTTCAT pLKO.1 1190 CDS 100% 4.950 3.465 N VIPR1 n/a
8 TRCN0000358230 CCTCACTGTGGTGGATCATAA pLKO_005 1525 CDS 100% 13.200 7.920 N VIPR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005265438.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07129 pDONR223 100% 90.8% 90.8% None 0_1ins123;321T>C;899G>T n/a
2 ccsbBroad304_07129 pLX_304 0% 90.8% 90.8% V5 0_1ins123;321T>C;899G>T n/a
3 TRCN0000476561 AAAGATGGGATGGCTGCGAACTCC pLX_317 16.2% 90.8% 90.8% V5 0_1ins123;321T>C;899G>T n/a
4 TRCN0000491293 CAAGCCACGGCCGGCCACCGCAAA pLX_317 20.4% 90.8% 90.6% V5 (many diffs) n/a
5 TRCN0000489217 CCCCCCTGAAGTTTGTATTGCCAC pLX_317 25.1% 90.8% 90.8% V5 (not translated due to prior stop codon) (many diffs) n/a
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