Construct: ORF TRCN0000476571

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000114.1_s317c1
Derived from:
ccsbBroadEn_10514
DNA Barcode:
GTGTTCCCCGCGGTCTGGCGAACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TP73-AS1 (57212)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476571
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57212 TP73-AS1 TP73 antisense RNA 1 NR_033712.1 17.9% (many diffs)
2 human 57212 TP73-AS1 TP73 antisense RNA 1 NR_033708.1 14.7% 1_1170del;1774_4077del
3 human 57212 TP73-AS1 TP73 antisense RNA 1 NR_033709.1 12.8% 1_1170del;1774_4690del
4 human 57212 TP73-AS1 TP73 antisense RNA 1 NR_033710.1 10.1% 1_1170del;1774_5945del
5 human 57212 TP73-AS1 TP73 antisense RNA 1 NR_033711.1 9.4% 1_1170del;1774_6409del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
672
ORF length:
603
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtgtcttttg tccagctcag ccgcctcgga tctcgctgcc accagcctta
121ctgcacaccc gtgccacccg cccttgcccc gtcagcctca gcctcagctc attctctcag
181gcagtcccag cattggcacg gtacctcctc ccgctgtggg ccacacgtct ctgctccctg
241tcaaccctcc tgccatcagc accaccacca gcgacttgtc tgcccgggag gatgcaacac
301catctgcctc caccggccac ctttcagtgt ttcctgcttt ccaagtaaag ataccagcag
361tgccctcaga gcagaccagc cagagttttt ctgaagcctc ccacagggtg ctccccggag
421gaggcccgag atgctctcgt gactttGGAG CCGGGGTGGC TGGCCACCTT GGCCTGGGCA
481TCTTTGGGGT GGGCTTCGGG AGCCCGGCAC TGCTGCAGAG TGTGGTGGAT GAGAACAGCT
541GCTGCTTGCT GTACGTGGTG GAGGACCAGC TGTGTGATGT GGAGCAAGCC TTCAGAGCTG
601AGCATTTGGG CCAACACCAG AGTGGTTCGG GAACAGGATG CAGACATTGT CCTCAACGAC
661CAGCGGCACT TTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
721ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
781CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGTG TTCCCCGCGG TCTGGCGAAC
841GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)

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