Transcript: Human NR_033710.1

Homo sapiens TP73 antisense RNA 1 (TP73-AS1), transcript variant 2, long non-coding RNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
TP73-AS1 (57212)
Length:
5945
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_033710.1
NBCI Gene record:
TP73-AS1 (57212)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_033710.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000162409 CGGTGTAAATTGACTCAGAAA pLKO.1 3897 3UTR 100% 4.950 6.930 N TP73-AS1 n/a
2 TRCN0000163810 GCGGTGTAAATTGACTCAGAA pLKO.1 3896 3UTR 100% 4.950 6.930 N TP73-AS1 n/a
3 TRCN0000423995 AGCGGCACTTTGATCCGGTTT pLKO_005 1764 3UTR 100% 4.050 5.670 N TP73-AS1 n/a
4 TRCN0000164072 CCAAGTAAAGATACCAGCAGT pLKO.1 1443 3UTR 100% 2.640 3.696 N TP73-AS1 n/a
5 TRCN0000372681 GGTCATCAGCCAGGTTGATTG pLKO_005 2269 3UTR 100% 10.800 14.040 N TP73-AS1 n/a
6 TRCN0000161953 GTTTCCTGCTTTCCAAGTAAA pLKO.1 1431 3UTR 100% 13.200 9.240 N TP73-AS1 n/a
7 TRCN0000372680 TTGATTGTGCGGGTTAGATAG pLKO_005 2211 3UTR 100% 10.800 7.560 N TP73-AS1 n/a
8 TRCN0000166821 CCTGGTAGATTGTGTGGGTTA pLKO.1 2314 3UTR 100% 4.050 2.835 N TP73-AS1 n/a
9 TRCN0000161954 GCTTTCCAAGTAAAGATACCA pLKO.1 1438 3UTR 100% 3.000 2.100 N TP73-AS1 n/a
10 TRCN0000436012 AGAGTGGTTCGGGAACAGGAT pLKO_005 1721 3UTR 100% 2.640 1.848 N TP73-AS1 n/a
11 TRCN0000436738 TGAGCATTTGGGCCAACACCA pLKO_005 1701 3UTR 100% 2.640 1.848 N TP73-AS1 n/a
12 TRCN0000163966 CAAGTAAAGATACCAGCAGTG pLKO.1 1444 3UTR 100% 2.250 1.575 N TP73-AS1 n/a
13 TRCN0000441751 AGACATTGTCCTCAACGACCA pLKO_005 1744 3UTR 100% 2.160 1.512 N TP73-AS1 n/a
14 TRCN0000378809 AGCCTTCAGAGCTGAGCATTT pLKO_005 1689 3UTR 100% 10.800 6.480 N TP73-AS1 n/a
15 TRCN0000432058 AGCCTCAGCTCATTCTCTCAG pLKO_005 1262 3UTR 100% 4.050 2.430 N TP73-AS1 n/a
16 TRCN0000139739 CCTTCTGAGTAGCTGGGATTA pLKO.1 4173 3UTR 100% 10.800 5.400 Y INAVA n/a
17 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4309 3UTR 100% 5.625 2.813 Y KLHL30 n/a
18 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4309 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_033710.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10514 pDONR223 100% 10.1% None 1_1170del;1774_5945del n/a
2 TRCN0000476571 GTGTTCCCCGCGGTCTGGCGAACG pLX_317 37.6% 10.1% V5 1_1170del;1774_5945del n/a
3 ccsbBroadEn_13781 pDONR223 100% 4.1% None (many diffs) n/a
4 ccsbBroad304_13781 pLX_304 0% 4.1% V5 (many diffs) n/a
5 TRCN0000469746 TCCCTGCGCCGTCCGGGTTTTCGA pLX_317 100% 4.1% V5 (many diffs) n/a
6 ccsbBroadEn_15487 pDONR223 0% 2.7% None (many diffs) n/a
7 ccsbBroad304_15487 pLX_304 0% 2.7% V5 (many diffs) n/a
8 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% 2.7% V5 (many diffs) n/a
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