Construct: ORF TRCN0000476754
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004870.1_s317c1
- Derived from:
- ccsbBroadEn_14364
- DNA Barcode:
- TGCAGATGGTAAGCGTAGAGCCTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC38 (120935)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476754
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 120935 | CCDC38 | coiled-coil domain containi... | NM_182496.3 | 99.5% | 99.4% | (many diffs) |
| 2 | human | 120935 | CCDC38 | coiled-coil domain containi... | XM_011537883.2 | 99.5% | 99.4% | (many diffs) |
| 3 | human | 120935 | CCDC38 | coiled-coil domain containi... | XM_011537884.2 | 92.4% | 92.5% | (many diffs) |
| 4 | human | 120935 | CCDC38 | coiled-coil domain containi... | XM_011537886.2 | 92.4% | 92.5% | (many diffs) |
| 5 | human | 120935 | CCDC38 | coiled-coil domain containi... | XM_011537887.2 | 92.4% | 92.5% | (many diffs) |
| 6 | human | 120935 | CCDC38 | coiled-coil domain containi... | XM_006719229.2 | 70.4% | 68.2% | (many diffs) |
| 7 | human | 120935 | CCDC38 | coiled-coil domain containi... | XM_011537888.3 | 61% | 61.1% | (many diffs) |
| 8 | human | 120935 | CCDC38 | coiled-coil domain containi... | XM_011537889.1 | 54.1% | 52.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1755
- ORF length:
- 1686
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcctcaaat ttaatgccaa cactgaattc tggaggtaaa gtaaaagatg 121 gctcaaccaa agaggacagg ccttataaga tctttttcag agatctcttt cttgtcaaag 181 aaaatgaaat ggcagcaaag gaaacggaaa aatttatgaa ccgtaacatg aaagtctacc 241 agaaaactac tttttcatcc agaatgaaga gtcattcata cctgagccaa ctagctttct 301 accctaaaag gagtggtagg tcatttgaaa agtttgggcc aggtcctgct ccgattccta 361 gattaataga aggttccgac acaaaaagga ctgtccatga atttattaat gaccagagag 421 acaggtttct gctcgagtat gctttgtcaa ccaaaagaaa cacaatcaaa aagtttgaaa 481 aagacatagc aatgagggaa cggcaactaa aaaaagcaga gaaaaagctc caagatgatg 541 cactggcctt tgaagagttc cttcgagaaa atgaccagag atctgtagac gctctgaaaa 601 tggcagcaca ggaaacaata aacaaactcc aaatgacagc agagctgaag aaagcaagca 661 tggaggtaca agcagtgaaa agtgaaatag caaaaacaga attcctcctc agggagtata 721 tgaaatatgg tttttttctg ctgcaaatgt ctccaaaaca ttggcaaatc cagcaagcac 781 taaaaagagc acaggcatca aaaagtaaag caaatatcat ccttccaaaa atattagcaa 841 aattatcatt acattcaagt aacaaggaag gcatccttga ggagtccggg aggacagccg 901 tcctttcaga agatgcttct cagggaagag acagccaagg aaagccaagc agaagcctga 961 ctcgcactcc agagaaaaag aaatcaaacc tggctgaaag tttcggttca gaagacagtt 1021 tggaattcct tttagatgat gaaatggacg ttgatttgga gccagcactt tatttcaagg 1081 aaccagagga gttacttcaa gtcctcagag agctggaaga gcagaatctt actttgtttc 1141 aatattccca agatgtagat gaaaatcttg aagaggtaaa caaaagagaa aaagttatac 1201 aggataaaac aaatagcaac atagagtttc ttttggagca agaaaaaatg cttaaagcta 1261 actgtgtgag agaagaagag aaagcagcag aattgcaatt aaagtccaag ctctttagct 1321 ttggagaatt taattcagat gctcaggaaa tactgataga ctcacttagt aaaaagattc 1381 tacagtacaa agtctgcatt gGAGATGCTG AGGATGACGG CCTCAACCCA ATTCAAAAGC 1441 TGGTAAAAGT AGAATCTCGC CTGGTAGAAC TGTGTGACCT CATCGAATCC ATTCCCAAAG 1501 AAAATGTGGA GGCAATTGAG AGGATGAAAC AGAAAGAATG GCGGCAAAAG TTTCGTGATG 1561 AGAAAATGAA AGAAAAACAA AGACACCAAC AGGAAAGGCT AAAAGCTGCT CTGGAAAAAG 1621 CAGTAGCACA ACCAAAGAAA AAGTTGGGAA GACGACTTGT CTTCCATTCA AAACCTCCAT 1681 CTGGTAACAA ACAGCAGCTA CCTTTAGTCA ATGAAACAAA AACAAAATCA CAAGAGGAAG 1741 AATATTTTTT TACTTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 1801 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 1861 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TGCAGATGGT AAGCGTAGAG 1921 CCTGACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt