Construct: ORF TRCN0000476913

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003150.1_s317c1
Derived from:
ccsbBroadEn_12233
DNA Barcode:
CAATAACAACTACGCATTTTGACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FERMT1 (55612)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476913
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55612 FERMT1 fermitin family member 1 NM_017671.4 61.9% 61.7% 1_771del;787C>A;863G>A
2 human 55612 FERMT1 fermitin family member 1 XM_024451935.1 61.9% 61.7% 1_771del;787C>A;863G>A
3 mouse 241639 Fermt1 fermitin family member 1 XM_006499507.1 62.4% 64% (many diffs)
4 mouse 241639 Fermt1 fermitin family member 1 NM_198029.2 53.6% 55% (many diffs)
5 mouse 241639 Fermt1 fermitin family member 1 XM_017318206.1 53.6% 55% (many diffs)
6 mouse 241639 Fermt1 fermitin family member 1 XM_017318207.1 53.6% 55% (many diffs)
7 mouse 241639 Fermt1 fermitin family member 1 XM_017318210.1 53.6% 55% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1329
ORF length:
1260
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaacaaggc atcaaagagg atgagcagct gctcttacga tttaaatatt
121attctttctt cgacttgaat cctaaatatg atgctgtcca aataaaccaa ctctatgagc
181aagccaggtg ggccattctc ttagaagaaa ttgattgcac agaggaagaa atgttgatct
241ttgcagctct acagtaccac attagcaaac tgtcgttgtc tgctgaaaca caggattttg
301caggcgagtc cgaggttgat gaaatagaag cggcgctttc taatttggaa gtaaccctag
361aaggtggaaa agcggacagc cttttggagg acattactga tatccctaaa cttgcagata
421atctcaaatt atttaggccc aagaagttac taccaaaagc tttcaaacaa tattggttta
481tctttaaaga cacatccata gcatacttta aaaataagga acttgaacaa ggagaaccac
541tagaaaaact aaatcttaga ggctgcgaag ttgtgcccga tgtaaatgta gcaggaagaa
601aatttggaat caagttacta atccctgttg ccgatggtat gaatgaaatg tatttgagat
661gtgaccatga gaatcaatac gcccaatgga tggctgcctg catgttggca tcgaagggca
721aaaccatggc agacagctcc taccagccag aggtcctcaa catcctttca tttctgagga
781tgaaaaacag gaactctgca tctcaggtgg cttccagtct cgaaaacatg gatatgaacc
841cagaatgttt tgtgtcacca cggtgtgcaa aaagacacaa atccaaacag ctggccgccc
901ggatcctgga ggcgcaccag aacgtggccc agatgcccct ggtcgaagcc aagctgcggt
961tcatccaggc gtggcagtca ctgcctgagt ttggcctcac ctactaccTT GTCAGATTTA
1021AAGGAAGCAA AAAAGATGAC ATTCTGGGAG TTTCATATAA CAGGTTGATT AAAATTGATG
1081CAGCCACCGG GATTCCAGTG ACAACATGGA GATTCACAAA TATCAAACAG TGGAATGTAA
1141ACTGGGAAAC CCGGCAGGTG GTCATCGAGT TTGACCAAAA CGTCTTTACT GCTTTCACCT
1201GCCTGAGTGC AGATTGCAAG ATTGTGCACG AGTACATTGG CGGCTACATT TTCTTGTCCA
1261CCCGCTCCAA GGACCAGAAT GAAACACTCG ATGAGGACTT GTTCCACAAA TTGACCGGCG
1321GTCAGGATTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1381CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1441TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACAATAA CAACTACGCA TTTTGACCAC
1501GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)