Construct: ORF TRCN0000476954

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006275.1_s317c1
Derived from:
ccsbBroadEn_03135
DNA Barcode:
TGTGCTCTTCAAGGTTGCAGTGAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERVW-1 (30816)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476954
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 30816 ERVW-1 endogenous retrovirus group... NM_001130925.2 100% 100%
2 human 30816 ERVW-1 endogenous retrovirus group... NM_014590.3 100% 100%
3 human 105377310 LOC105377310 syncytin-1-like XM_011532442.2 38.5% 34.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1683
ORF length:
1614
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggccctccct tatcatattt ttctctttac tgttctttta ccctctttca
121ctctcactgc accccctcca tgccgctgta tgaccagtag ctccccttac caagagtttc
181tatggagaat gcagcgtccc ggaaatattg atgccccatc gtataggagt ctttctaagg
241gaacccccac cttcactgcc cacacccata tgccccgcaa ctgctatcac tctgccactc
301tttgcatgca tgcaaatact cattattgga caggaaaaat gattaatcct agttgtcctg
361gaggacttgg agtcactgtc tgttggactt acttcaccca aactggtatg tctgatgggg
421gtggagttca agatcaggca agagaaaaac atgtaaaaga agtaatctcc caactcaccc
481gggtacatgg cacctctagc ccctacaaag gactagatct ctcaaaacta catgaaaccc
541tccgtaccca tactcgcctg gtaagcctat ttaataccac cctcactggg ctccatgagg
601tctcggccca aaaccctact aactgttgga tatgcctccc cctgaacttc aggccatatg
661tttcaatccc tgtacctgaa caatggaaca acttcagcac agaaataaac accacttccg
721ttttagtagg acctcttgtt tccaatctgg aaataaccca tacctcaaac ctcacctgtg
781taaaatttag caatactaca tacacaacca actcccaatg catcaggtgg gtaactcctc
841ccacacaaat agtctgccta ccctcaggaa tattttttgt ctgtggtacc tcagcctatc
901gttgtttgaa tggctcttca gaatctatgt gcttcctctc attcttagtg ccccctatga
961ccatctacac tgaacaagat ttatacagtt atgtcatatc taagccccgc aacaaaagag
1021tacccattct tccttttgtt ataggagcag gagtgctagg tgcactaggt actggcattg
1081gcggtatcac aacctctact cagttctact acaaactatc tcaagaacta aatggggaca
1141tggaacgggt cgccgactcc ctggtcacct tgcaagatca acttaactcc ctagcagcag
1201tagtccttca aaatcgaaga gctttagact tgctaaccgc tgaaagaggg ggaacctgtt
1261tatttttagg ggaagaatgc tgttattatg ttaatcaatc cggaatcgtc actgagaaag
1321ttaaagaaat tcgagatcga atacaacgta gagcagagga gcttcgaaac actggaccct
1381ggggcctccT CAGCCAATGG ATGCCCTGGA TTCTCCCCTT CTTAGGACCT CTAGCAGCTA
1441TAATATTGCT ACTCCTCTTT GGACCCTGTA TCTTTAACCT CCTTGTTAAC TTTGTCTCTT
1501CCAGAATCGA AGCTGTAAAA CTACAAATGG AGCCCAAGAT GCAGTCCAAG ACTAAGATCT
1561ACCGCAGACC CCTGGACCGG CCTGCTAGCC CACGATCTGA TGTTAATGAC ATCAAAGGCA
1621CCCCTCCTGA GGAAATCTCA GCTGCACAAC CTCTACTACG CCCCAATTCA GCAGGAAGCA
1681GTTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1741TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1801GGCTTTATAT ATCTTGTGGA AAGGACGATG TGCTCTTCAA GGTTGCAGTG ATACGCGTTA
1861AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)