Transcript: Human XM_011532442.2

PREDICTED: Homo sapiens syncytin-1-like (LOC105377310), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC105377310 (105377310)
Length:
1491
CDS:
107..862

Additional Resources:

NCBI RefSeq record:
XM_011532442.2
NBCI Gene record:
LOC105377310 (105377310)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011532442.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412806 CACCTTGCAAGATCAACTTAA pLKO_005 316 CDS 100% 13.200 6.600 Y ERVW-1 n/a
2 TRCN0000136945 CCATGATTCAATTACCTCCCA pLKO.1 1161 3UTR 100% 0.660 0.330 Y DISC1 n/a
3 TRCN0000222198 CCATCTTGGAAGTGGCCTGTA pLKO.1 1099 3UTR 100% 4.050 2.025 Y Pkmyt1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011532442.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03135 pDONR223 100% 38.5% 34.7% None (many diffs) n/a
2 ccsbBroad304_03135 pLX_304 0% 38.5% 34.7% V5 (many diffs) n/a
3 TRCN0000476954 TGTGCTCTTCAAGGTTGCAGTGAT pLX_317 18.5% 38.5% 34.7% V5 (many diffs) n/a
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