Construct: ORF TRCN0000476985

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004078.1_s317c1
Derived from:
ccsbBroadEn_05946
DNA Barcode:
AGTCCTGTTTTAACGAGAATCACA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
CCNA2 (890)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476985
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 890 CCNA2 cyclin A2 NM_001237.5 99.8% 2.7% 37G>T;487A>G
2 mouse 12428 Ccna2 cyclin A2 NM_009828.2 83.8% .7% (many diffs)
3 mouse 12428 Ccna2 cyclin A2 XM_017319444.1 83.8% .7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
105
ORF length:
36
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttgggcaac tctgcgccgg ggcctgcgac ccgctaggcg ggctcggcgc
121tgctagcatt gcagcagacg gcgctccaag aggaccagga gaatatcaac ccggaaaagg
181cagcgcccgt ccaacaaccg cggacccggg ccgcgctggc ggtactgaag tccgggaacc
241cgcggggtct agcgcagcag cagaggccga agacgagacg ggttgcaccc cttaaggatc
301ttcctgtaaa tgatgagcat gtcaccgttc ctccttggaa agcaaacagt aaacagcctg
361cgttcaccat tcatgtggat gaagcagaaa aagaagctca gaagaagcca gctgaatctc
421aaaaaataga gcgtgaagat gccctggctt ttaattcagc cattagttta cctggaccca
481gaaaaccatt ggtccctctt gattatccaa tggatggtag ttttgagtca ccacatacta
541tggacatgtc aattgtatta gaagatgaaa agccagtgag tgttaatgaa gtaccagact
601accatgagga tattcacaca taccttaggg aaatggaggt taaatgtaaa cctaaagtgg
661gttacatgaa gaaacagcca gacatcacta acagtatgag agctatcctc gtggactggt
721tagttgaagt aggagaagaa tataaactac agaatgagac cctgcatttg gctgtgaact
781acattgatag gttcctgtct tccatgtcag tgctgagagg aaaacttcag cttgtgggca
841ctgctgctat gctgttagcc tcaaagtttg aagaaatata ccccccagaa gtagcagagt
901ttgtgtacat tacagatgat acctacacca agaaacaagt tctgagaatg gagcatctag
961ttttgaaagt ccttactttt gacttagctg ctccaacagt aaatcagttt cttacccaat
1021actttctgca tcagcagcct gcaaactgca aagttgaaag tttagcaatg tttttgggag
1081aattaagttt gatagatgct gacccatacc tcaagtattt gccatcagtt attgctGGAG
1141CTGCCTTTCA TTTAGCACTC TACACAGTCA CGGGACAAAG CTGGCCTGAA TCATTAATAC
1201GAAAGACTGG ATATACCCTG GAAAGTCTTA AGCCTTGTCT CATGGACCTT CACCAGACCT
1261ACCTCAAAGC ACCACAGCAT GCACAACAGT CAATAAGAGA AAAGTACAAA AATTCAAAGT
1321ATCATGGTGT TTCTCTCCTC AACCCACCAG AGACACTAAA TCTGTTGCCA ACTTTCTTGT
1381ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1441AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1501GAAAGGACGA AGTCCTGTTT TAACGAGAAT CACAACGCGT TAAGTCgaca atcaacctct
1561ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)