Construct: ORF TRCN0000477138

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009008.1_s317c1
Derived from:
ccsbBroadEn_07708
DNA Barcode:
GTCGTGATGTGGTTCGTTCTCGGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EHD1 (10938)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477138
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10938 EHD1 EH domain containing 1 NM_001282444.2 99.8% 100% 66T>C;1005C>G
2 human 10938 EHD1 EH domain containing 1 NM_006795.4 99.8% 100% 66T>C;1005C>G
3 human 10938 EHD1 EH domain containing 1 NM_001282445.1 97.4% 97.4% 1_42del
4 human 30845 EHD3 EH domain containing 3 NM_014600.3 82.1% 86.5% (many diffs)
5 mouse 13660 Ehd1 EH-domain containing 1 NM_010119.5 91% 99.4% (many diffs)
6 mouse 57440 Ehd3 EH-domain containing 3 NM_020578.3 79.3% 86.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1671
ORF length:
1602
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttcagctgg gtcagcaagg atgcccgccg caagaaggag ccggagctct
121tccagacggt ggccgagggg ctgcggcagc tgtacgcgca gaagctgcta cccctggagg
181agcactaccg cttccacgag ttccactcgc ccgcgctgga ggacgctgac ttcgacaaca
241agcctatggt gctcctcgtg gggcagtaca gcacgggcaa gaccaccttc atccgacacc
301tgatcgagca ggacttcccg gggatgcgca tcgggcccga gcccaccacc gactccttca
361tcgccgtcat gcacggcccc actgagggcg tggtgccggg caacgcgctc gtggtggacc
421cgcggcgccc cttccgcaag ctcaacgcgt ttggcaacgc tttcctcaac aggttcatgt
481gtgcccagct gcccaacccc gtcctggaca gcatcagcat catcgacacc cccgggatcc
541tgtctggaga gaagcagcgg atcagcagag gctatgactt tgcagccgtc ctggagtggt
601tcgcggagcg tgtggaccgc atcatcctgc tcttcgacgc ccacaagctg gacatctccg
661atgagttctc ggaagtgatc aaggctctga agaaccatga ggacaagatc cgcgtggtgc
721tgaacaaggc agaccagatc gagacgcagc agctgatgcg ggtgtacggg gccctcatgt
781ggtccctggg caagatcatc aacacccccg aggtggtcag ggtctacatc ggctccttct
841ggtcccaccc gctcctcatc cccgacaacc gcaagctctt tgaggccgag gagcaggacc
901tcttcaagga catccagtca ctgccccgaa acgccgccct caggaagctc aatgacctga
961tcaagcgggc acggctggcc aaggttcacg cctacatcat cagctccctc aagaaagaga
1021tgcccaatgt ctttggtaaa gagagcaaaa agaaagagct ggtgaacaac ctgggagaga
1081tctaccagaa gattgagcgc gagcaccaga tctcccctgg ggacttcccg agcctccgca
1141agatgcagga actcctgcag acccaggact tcagcaagtt ccaggcgctg aagcccaagc
1201tgctggacac ggtggatgac atgctggcca acgacatcgc gcggctgatg gtgatggtgc
1261ggcaggagga gtccctgatg ccttcccagg tggtcaaggg cggcgccttt gacggcacca
1321tgaacgggcc gttcgggcac ggctacggcg agggggccgg cgagggcatc gacgacgtgg
1381agtgggtggt gggcaaggac aagcccaccT ACGACGAGAT CTTCTACACG CTGTCCCCTG
1441TCAACGGCAA GATCACGGGC GCCAACGCCA AGAAGGAGAT GGTGAAGTCC AAGCTCCCCA
1501ACACCGTGCT AGGGAAGATC TGGAAGCTGG CCGACGTGGA CAAGGACGGG CTGCTGGACG
1561ACGAGGAGTT CGCGCTGGCC AACCACCTCA TCAAGGTCAA GCTGGAGGGC CACGAGCTGC
1621CCGCCGACCT GCCCCCGCAC CTGGTGCCGC CCTCCAAGCG CAGACATGAG TTGCCAACTT
1681TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1741CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1801CTTGTGGAAA GGACGAGTCG TGATGTGGTT CGTTCTCGGT ACGCGTTAAG TCgacaatca
1861acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)