Construct: ORF TRCN0000477352

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009810.1_s317c1
Derived from:
ccsbBroadEn_10165
DNA Barcode:
GAGCCTAGTGTCAGGTTCCGGTGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPCL2 (440563)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477352
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 440563 HNRNPCL2 heterogeneous nuclear ribon... NM_001136561.3 100% 100%
2 human 343069 HNRNPCL1 heterogeneous nuclear ribon... NM_001013631.2 97.2% 96.2% (many diffs)
3 human 649330 HNRNPCL3 heterogeneous nuclear ribon... NM_001146181.2 95.2% 92.1% (many diffs)
4 human 101060301 HNRNPCL4 heterogeneous nuclear ribon... NM_001302551.1 95.1% 92.1% (many diffs)
5 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077443.1 93.5% 88.3% (many diffs)
6 human 3183 HNRNPC heterogeneous nuclear ribon... NM_004500.3 93.5% 88.3% (many diffs)
7 human 3183 HNRNPC heterogeneous nuclear ribon... XM_006720125.3 93.5% 88.3% (many diffs)
8 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536712.2 93.5% 88.3% (many diffs)
9 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021252.2 93.5% 88.3% (many diffs)
10 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021253.2 93.5% 88.3% (many diffs)
11 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449558.1 93.5% 88.3% (many diffs)
12 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449559.1 93.5% 88.3% (many diffs)
13 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077442.1 89.5% 84.6% (many diffs)
14 human 3183 HNRNPC heterogeneous nuclear ribon... NM_031314.2 89.5% 84.6% (many diffs)
15 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536708.1 89.5% 84.6% (many diffs)
16 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536709.3 89.5% 84.6% (many diffs)
17 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536710.2 89.5% 84.6% (many diffs)
18 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536711.2 89.5% 84.6% (many diffs)
19 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449556.1 89.5% 84.6% (many diffs)
20 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449557.1 89.5% 84.6% (many diffs)
21 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170983.1 86.9% 86.3% (many diffs)
22 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518578.2 86.9% 86.3% (many diffs)
23 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315857.1 86.9% 86.3% (many diffs)
24 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315858.1 86.9% 86.3% (many diffs)
25 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170984.1 86.7% 86% (many diffs)
26 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518581.2 86.7% 86% (many diffs)
27 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315859.1 86.7% 86% (many diffs)
28 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170981.1 85.1% 84.3% (many diffs)
29 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170982.1 85.1% 84.3% (many diffs)
30 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315855.1 85.1% 84.3% (many diffs)
31 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315856.1 85.1% 84.3% (many diffs)
32 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518574.2 83.2% 82.7% (many diffs)
33 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315850.1 83.2% 82.7% (many diffs)
34 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315851.1 83.2% 82.7% (many diffs)
35 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_011244965.2 83% 82.4% (many diffs)
36 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315852.1 83% 82.4% (many diffs)
37 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315853.1 83% 82.4% (many diffs)
38 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315854.1 83% 82.4% (many diffs)
39 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_016884.3 81.6% 80.8% (many diffs)
40 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518571.3 81.6% 80.8% (many diffs)
41 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518572.3 81.6% 80.8% (many diffs)
42 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315849.1 81.6% 80.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
948
ORF length:
879
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggccagcaac gttaccaaca agatggatcc tcactccgtg aactcccgtg
121tgttcattgg gaatctcaac actcttgttg tcaagaaatc tgatgtggag gcgatctttt
181ccaagtatgg caaaattgcg ggctgctctg ttcataaggg ctttgccttc gttcaatatg
241ataaggagaa aaatgcccgg gctgctgtag caggagagga tggcagaatg attgctagcc
301aggttgcagt tattaacctg gctgcagagc caaaagtgaa ccgaggaaac gcaggtgtga
361aacgatccgc agcggagatg tacggctcct cttttgactt ggactatggc tttcaacggg
421attattatga tgggatgtac agtttcccag cacgtgtacc tcctcctcct cccattgctc
481tggctgtagt gccctcgaaa cgccagcgca tatcaggaaa cacctcacga aggggcaaaa
541gtggcttcaa ttctaagagt ggaaagcggg gatcttccaa gtctggaaag ctgaaaggag
601atgaccTTCA GGCCATTAAG CAGGAGTTGA CCCAGATAAA ACAGAAAGTG GATTCTCTCC
661TGGAAAACCT GGAAAAAATT GAAAAGGAAC AGAGCAAACA AGAGGTAGAG GTGAAAAATG
721CTAAGTCAGA AGAGGAGCAG AGCAGTAGCT CCATGAAGAA AGATGAGACT CATGTAAAGA
781TGGAGTCTGA GGGGGGTGCA GAAGACTCTG CTGAGGAGGG GGACCCACTG GATGATGATG
841ATAATGAAGA TCAGGGGGAC AACCAGCTTC ATTTGATCAA GAATAATGAA AAAGATGCTG
901AGGAAGGAGA GGATAACAGA GACAGCACCA ATGGCCAGGA TGACTCTTTG CCAACTTTCT
961TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1021CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1081GTGGAAAGGA CGAGAGCCTA GTGTCAGGTT CCGGTGGACG CGTTAAGTCg acaatcaacc
1141tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)