Construct: ORF TRCN0000477458

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015358.1_s317c1
Derived from:
ccsbBroadEn_09340
DNA Barcode:
TTGTCATACCGCACTTCGCCCATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PXYLP1 (92370)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477458
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92370 PXYLP1 2-phosphoxylose phosphatase 1 NM_001037172.3 99.8% 100% 216C>T;1026C>T
2 human 92370 PXYLP1 2-phosphoxylose phosphatase 1 NM_152282.4 99.8% 100% 216C>T;1026C>T
3 human 92370 PXYLP1 2-phosphoxylose phosphatase 1 XM_024453830.1 96% 91.9% (many diffs)
4 human 92370 PXYLP1 2-phosphoxylose phosphatase 1 XM_005247903.4 95.1% 95.2% (many diffs)
5 human 92370 PXYLP1 2-phosphoxylose phosphatase 1 NM_001282728.1 91.9% 92% 0_1ins114;102C>T;912C>T
6 human 92370 PXYLP1 2-phosphoxylose phosphatase 1 XM_017007511.1 91.9% 92% 0_1ins114;102C>T;912C>T
7 mouse 235534 Pxylp1 2-phosphoxylose phosphatase 1 NM_001289645.1 84.5% 89.1% (many diffs)
8 mouse 235534 Pxylp1 2-phosphoxylose phosphatase 1 NM_001289646.1 84.5% 89.1% (many diffs)
9 mouse 235534 Pxylp1 2-phosphoxylose phosphatase 1 NM_001289647.1 84.5% 89.1% (many diffs)
10 mouse 235534 Pxylp1 2-phosphoxylose phosphatase 1 NM_153420.3 84.5% 89.1% (many diffs)
11 mouse 235534 Pxylp1 2-phosphoxylose phosphatase 1 XM_006511138.3 84.5% 89.1% (many diffs)
12 mouse 235534 Pxylp1 2-phosphoxylose phosphatase 1 XM_017313346.1 84.5% 89.1% (many diffs)
13 mouse 235534 Pxylp1 2-phosphoxylose phosphatase 1 XM_006511139.2 81.2% 85.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1506
ORF length:
1440
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct tttccgcaac cgcttcttgc tgctgctggc cctggctgcg ctgctggcct
121ttgtgagcct cagcctgcag ttcttccacc tgatcccggt gtcgactcct aagaatggaa
181tgagtagcaa gagtcgaaag agaatcatgc ccgaccctgt gacggagccc cctgtgacag
241accccgttta tgaagctctt ttgtactgca acatccccag tgtggccgag cgcagcatgg
301aaggtcatgc cccgcatcat tttaagctgg tctcagtgca tgtgttcatt cgccacggag
361acaggtaccc actgtatgtc attcccaaaa caaagcgacc agaaattgac tgcactctgg
421tggctaacag gaaaccgtat cacccaaaac tggaagcttt cattagtcac atgtcaaaag
481gatccggagc ctctttcgaa agccccttga actccttgcc tctttaccca aatcacccat
541tgtgtgagat gggagagctc acacagacag gagttgtgca gcatttgcag aacggtcagc
601tgctgaggga tatctatcta aagaaacaca aactcctgcc caatgattgg tctgcagacc
661agctctattt agagaccact gggaaaagcc ggaccctaca aagtgggctg gccttgcttt
721atggctttct cccagatttt gactggaaga agatttattt caggcaccag ccaagtgcgc
781tgttctgctc tggaagctgc tattgcccgg taagaaacca gtatctggaa aaggagcagc
841gtcgtcagta cctcctacgt ttgaaaaaca gccagctgga gaagacctac ggggagatgg
901ccaagatcgt ggatgtcccc accaagcagc ttagagctgc caaccccata gactccatgc
961tctgccactt ctgccacaat gtcagctttc cctgtaccag aaatggctgt gttgacatgg
1021agcacttcaa ggtaattaag acccatcaga tcgaggatga aagggaaaga cgggagaaga
1081aattgtactt tgggtattct ctcctgggtg cccaccccat cctgaaccaa accatcggcc
1141ggatgcagcg tgccaccGAG GGCAGGAAAG AAGAGCTCTT TGCCCTCTAC TCTGCTCATG
1201ATGTCACTCT GTCACCAGTT CTCAGTGCCT TGGGCCTTTC AGAAGCCAGG TTCCCAAGGT
1261TTGCAGCCAG GTTGATCTTT GAGCTTTGGC AAGACAGAGA AAAGCCCAGT GAACATTCCG
1321TCCGGATTCT TTACAATGGC GTCGATGTCA CATTCCACAC CTCTTTCTGC CAAGACCACC
1381ACAAGCGTTC TCCCAAGCCC ATGTGCCCGC TTGAAAACTT GGTCCGCTTT GTGAAAAGGG
1441ACATGTTTGT AGCCCTGGGT GGCAGTGGTA CAAATTATTA TGATGCATGT CACAGGGAAG
1501GATTCTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1561TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1621CTTGGCTTTA TATATCTTGT GGAAAGGACG ATTGTCATAC CGCACTTCGC CCATCACGCG
1681TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)