Construct: ORF TRCN0000477461

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011192.1_s317c1
Derived from:
ccsbBroadEn_03372
DNA Barcode:
CGGCTTTAAAAAGCCCGTCCCAAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAB39 (51719)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477461
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51719 CAB39 calcium binding protein 39 NM_001130849.1 100% 100%
2 human 51719 CAB39 calcium binding protein 39 NM_001130850.1 100% 100%
3 human 51719 CAB39 calcium binding protein 39 NM_016289.4 100% 100%
4 human 51719 CAB39 calcium binding protein 39 XM_011511350.2 62.4% 61% (many diffs)
5 mouse 12283 Cab39 calcium binding protein 39 NM_001355046.1 92.4% 99.1% (many diffs)
6 mouse 12283 Cab39 calcium binding protein 39 NM_001355047.1 92.4% 99.1% (many diffs)
7 mouse 12283 Cab39 calcium binding protein 39 NM_133781.5 92.4% 99.1% (many diffs)
8 mouse 12283 Cab39 calcium binding protein 39 XM_006529091.3 92.4% 99.1% (many diffs)
9 mouse 12283 Cab39 calcium binding protein 39 XM_011247907.3 92.4% 99.1% (many diffs)
10 mouse 12283 Cab39 calcium binding protein 39 XM_030243907.1 92.4% 99.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc gttcccgttt gggaagtctc acaaatctcc agcagacatt gtgaagaatc
121tgaaggagag catggctgtt ctggaaaagc aagacatttc tgataaaaaa gcagaaaagg
181ctacagaaga agtttccaaa aatctggttg ccatgaaaga aattctgtat ggcacaaatg
241aaaaagagcc tcagacagaa gcagtagctc aacttgctca agaactctat aatagtgggc
301tccttagcac cctggtagct gatttacagc tcattgactt tgagggcaaa aaagacgtgg
361ctcaaatttt caacaatatt ctcagaagac aaattggtac gagaactcct actgttgaat
421acatctgcac ccaacagaat attttgttca tgttattgaa agggtatgaa tctccagaaa
481tagctctaaa ttgtggaata atgttaagag aatgcatcag acatgaacca cttgcaaaaa
541tcattttgtg gtcggaacag ttttatgatt tcttcagata tgtcgaaatg tcaacatttg
601acatagcttc agatgcattt gccacattca aggatttact tacaagacat aaattgctca
661gtgcagaatt tttggaacag cattatgata gatttTTCAG TGAATATGAG AAGTTACTTC
721ATTCAGAAAA TTATGTGACA AAAAGACAGT CACTGAAGCT TCTCGGTGAA CTACTACTAG
781ATAGACACAA CTTCACAATT ATGACAAAAT ACATCAGTAA ACCTGAGAAC CTCAAATTAA
841TGATGAACCT GCTGCGAGAC AAAAGTCGCA ACATCCAGTT TGAGGCCTTT CACGTTTTTA
901AGGTGTTTGT AGCCAATCCT AACAAGACGC AGCCCATCCT AGACATCCTC CTCAAGAACC
961AGGCCAAACT CATAGAGTTC CTCAGCAAGT TTCAGAACGA CAGGACGGAG GATGAGCAGT
1021TTAACGACGA GAAGACCTAT TTAGTTAAAC AGATCAGGGA TTTGAAGAGA CCAGCTCAGC
1081AAGAAGCTTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1141CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1201TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACGGCTT TAAAAAGCCC GTCCCAACAC
1261GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)