Construct: ORF TRCN0000477461
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011192.1_s317c1
- Derived from:
- ccsbBroadEn_03372
- DNA Barcode:
- CGGCTTTAAAAAGCCCGTCCCAAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CAB39 (51719)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477461
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51719 | CAB39 | calcium binding protein 39 | NM_001130849.1 | 100% | 100% | |
| 2 | human | 51719 | CAB39 | calcium binding protein 39 | NM_001130850.1 | 100% | 100% | |
| 3 | human | 51719 | CAB39 | calcium binding protein 39 | NM_016289.4 | 100% | 100% | |
| 4 | human | 51719 | CAB39 | calcium binding protein 39 | XM_011511350.2 | 62.4% | 61% | (many diffs) |
| 5 | mouse | 12283 | Cab39 | calcium binding protein 39 | NM_001355046.1 | 92.4% | 99.1% | (many diffs) |
| 6 | mouse | 12283 | Cab39 | calcium binding protein 39 | NM_001355047.1 | 92.4% | 99.1% | (many diffs) |
| 7 | mouse | 12283 | Cab39 | calcium binding protein 39 | NM_133781.5 | 92.4% | 99.1% | (many diffs) |
| 8 | mouse | 12283 | Cab39 | calcium binding protein 39 | XM_006529091.3 | 92.4% | 99.1% | (many diffs) |
| 9 | mouse | 12283 | Cab39 | calcium binding protein 39 | XM_011247907.3 | 92.4% | 99.1% | (many diffs) |
| 10 | mouse | 12283 | Cab39 | calcium binding protein 39 | XM_030243907.1 | 92.4% | 99.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1089
- ORF length:
- 1023
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc gttcccgttt gggaagtctc acaaatctcc agcagacatt gtgaagaatc 121 tgaaggagag catggctgtt ctggaaaagc aagacatttc tgataaaaaa gcagaaaagg 181 ctacagaaga agtttccaaa aatctggttg ccatgaaaga aattctgtat ggcacaaatg 241 aaaaagagcc tcagacagaa gcagtagctc aacttgctca agaactctat aatagtgggc 301 tccttagcac cctggtagct gatttacagc tcattgactt tgagggcaaa aaagacgtgg 361 ctcaaatttt caacaatatt ctcagaagac aaattggtac gagaactcct actgttgaat 421 acatctgcac ccaacagaat attttgttca tgttattgaa agggtatgaa tctccagaaa 481 tagctctaaa ttgtggaata atgttaagag aatgcatcag acatgaacca cttgcaaaaa 541 tcattttgtg gtcggaacag ttttatgatt tcttcagata tgtcgaaatg tcaacatttg 601 acatagcttc agatgcattt gccacattca aggatttact tacaagacat aaattgctca 661 gtgcagaatt tttggaacag cattatgata gatttTTCAG TGAATATGAG AAGTTACTTC 721 ATTCAGAAAA TTATGTGACA AAAAGACAGT CACTGAAGCT TCTCGGTGAA CTACTACTAG 781 ATAGACACAA CTTCACAATT ATGACAAAAT ACATCAGTAA ACCTGAGAAC CTCAAATTAA 841 TGATGAACCT GCTGCGAGAC AAAAGTCGCA ACATCCAGTT TGAGGCCTTT CACGTTTTTA 901 AGGTGTTTGT AGCCAATCCT AACAAGACGC AGCCCATCCT AGACATCCTC CTCAAGAACC 961 AGGCCAAACT CATAGAGTTC CTCAGCAAGT TTCAGAACGA CAGGACGGAG GATGAGCAGT 1021 TTAACGACGA GAAGACCTAT TTAGTTAAAC AGATCAGGGA TTTGAAGAGA CCAGCTCAGC 1081 AAGAAGCTTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1141 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1201 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACGGCTT TAAAAAGCCC GTCCCAACAC 1261 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt